Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AC087685.1-201ENST00000587507 141 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 POLR3GP1-201ENST00000594073 261 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 AP003357.1-201ENST00000604497 148 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 AL136317.1-201ENST00000612653 226 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 MIR6516-201ENST00000630554 81 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 RNA5SP347-201ENST00000362445 119 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.148-201ENST00000363557 117 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 RNU6-654P-201ENST00000364373 107 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 SNORD113.3-201ENST00000364630 78 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 AC091951.2-201ENST00000500762 203 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 RNU6-699P-201ENST00000517081 110 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 AC006600.1-201ENST00000572529 153 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 JPX_2.1-201ENST00000614161 69 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 MIR6513-201ENST00000621188 64 ntBASIC0.51□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.259-201ENST00000364619 101 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.370-201ENST00000365589 108 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 RNU6-442P-201ENST00000383968 104 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 RNU6-1040P-201ENST00000383974 107 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 RNU6-1067P-201ENST00000384752 107 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 SNORD28B-201ENST00000390993 75 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 AL590004.1-201ENST00000405321 300 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 AC024405.2-202ENST00000532731 184 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 AC005730.3-201ENST00000583067 366 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 AL512605.2-201ENST00000592972 256 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 AC010205.1-201ENST00000616668 449 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 uc_338.17-201ENST00000619633 179 ntBASIC0.5□□□□□ -2.33
TRIM40Q6P9F5 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.331-201ENST00000365267 102 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.387-201ENST00000383918 102 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.462-201ENST00000384268 102 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 SNORD116-29-201ENST00000384516 83 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 RNY4P36-201ENST00000391116 96 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 MIR1827-201ENST00000408549 66 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 RNU6-613P-201ENST00000410412 108 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 MTCO2P27-201ENST00000420740 428 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 AF228730.4-201ENST00000421457 183 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 AC024067.1-201ENST00000426199 223 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 AC005534.2-201ENST00000431047 433 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 SNRPGP14-201ENST00000435400 219 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 AC098614.3-201ENST00000438957 440 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 RPL23AP54-201ENST00000495129 419 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 RNU6-830P-201ENST00000516353 107 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 RNU7-115P-201ENST00000516433 55 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 AC127455.1-201ENST00000565496 145 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 MIR5188-201ENST00000583467 113 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 AC091925.1-201ENST00000623204 462 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 MIR4272-201ENST00000635924 64 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 MTND4LP32-201ENST00000636111 270 ntBASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
TRIM40Q6P9F5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 RNA5SP499-201ENST00000363982 119 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 SNORA2B-201ENST00000384583 137 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 MIR598-201ENST00000384868 97 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 MIR802-201ENST00000390235 94 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 RNU1-119P-201ENST00000391122 165 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.619-201ENST00000410951 90 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 AC244098.3-201ENST00000424803 96 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 AC092628.1-201ENST00000436250 252 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 RNU4-54P-201ENST00000516428 129 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 MIR2115-201ENST00000516657 100 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 AL355375.2-201ENST00000574825 175 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 DEFB117-201ENST00000602356 141 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 AL355073.2-201ENST00000612106 557 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 Pinc.1-201ENST00000616452 154 ntBASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.48□□□□□ -2.33
TRIM40Q6P9F5 SNORD81.1-201ENST00000363064 77 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 RNU6-1209P-201ENST00000363655 107 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.428-201ENST00000384078 102 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 RNA5SP95-201ENST00000410319 137 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 NDUFA4P2-201ENST00000489989 244 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 RNU6-277P-201ENST00000516272 106 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 RNA5SP121-201ENST00000516537 101 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 SNORA20.3-201ENST00000516880 132 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.772-201ENST00000606692 102 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 MIR548AY-201ENST00000617669 107 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 MIR7111-201ENST00000619751 72 ntBASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.47□□□□□ -2.33
TRIM40Q6P9F5 U8.7-201ENST00000364940 136 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.463-201ENST00000384271 102 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 SNORD105-201ENST00000386910 85 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 RNU6-733P-201ENST00000410759 104 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 AC098934.3-201ENST00000430450 190 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.718-201ENST00000517110 102 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 SNORD116.3-201ENST00000517176 78 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 AC018659.1-201ENST00000551083 169 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 AC011195.1-201ENST00000578177 177 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 AC008507.4-201ENST00000585464 127 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 AC011373.1-201ENST00000607270 237 ntBASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.46□□□□□ -2.34
TRIM40Q6P9F5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 Y_RNA.168-201ENST00000363740 102 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 SNORD18A-201ENST00000363753 72 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 RNU6-268P-201ENST00000364174 107 ntBASIC0.45□□□□□ -2.34
TRIM40Q6P9F5 RNU6-396P-201ENST00000365369 105 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms