Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AP001485.1-201ENST00000604799 199 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 AL591926.4-201ENST00000616895 298 ntBASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.149-201ENST00000363558 117 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.396-201ENST00000383949 103 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 SNORA72-201ENST00000384339 132 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 MIR562-201ENST00000384894 95 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1248P-201ENST00000391096 64 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 MIR548F4-201ENST00000408515 105 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 OR9P1P-201ENST00000496431 281 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 RPS29P11-201ENST00000496507 171 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 AC136628.3-201ENST00000521868 290 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 AC073349.3-201ENST00000617616 186 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 MIR548AY-201ENST00000617669 107 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 MIR8062-201ENST00000621515 85 ntBASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
PDLIM3Q53GG5 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.293-201ENST00000364908 93 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 RNU6-326P-201ENST00000365480 107 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 SNORA72.4-201ENST00000384174 132 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 RNU6-163P-201ENST00000384396 106 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 MIR9-3-201ENST00000385084 90 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 SNORA36B-201ENST00000410438 131 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 AL161935.2-201ENST00000414627 60 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 RPS29P23-201ENST00000458635 123 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 SERF1AP1-201ENST00000514575 187 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 RNU7-115P-201ENST00000516433 55 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 PRR13P7-201ENST00000605538 430 ntBASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.38□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1084P-201ENST00000362498 107 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 SNORD33-201ENST00000362761 85 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.54-201ENST00000362766 105 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.117-201ENST00000363294 101 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.136-201ENST00000363444 102 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 SNORA7.1-201ENST00000363750 139 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.253-201ENST00000364562 112 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 RNA5SP363-201ENST00000365072 115 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 RNA5SP482-201ENST00000391269 118 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 RN7SKP51-201ENST00000410781 304 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 AL358176.2-201ENST00000425769 204 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 MIR3937-201ENST00000580135 106 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 AL162424.1-201ENST00000602325 221 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 AP003357.1-201ENST00000604497 148 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 AL365434.2-201ENST00000607979 234 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 AP001282.2-201ENST00000616149 309 ntBASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.37□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1323P-201ENST00000384025 107 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 RNU6-424P-201ENST00000384367 105 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 MIR194-1-201ENST00000384892 85 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 SNRPGP10-201ENST00000432323 225 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 AC079140.2-201ENST00000506193 142 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 RNU7-116P-201ENST00000516940 62 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1223P-201ENST00000517124 104 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 RNU6-902P-201ENST00000517212 91 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 AL157834.3-201ENST00000615543 103 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 AL121890.5-201ENST00000620848 304 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 AP000648.3-201ENST00000623539 4507 ntBASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.203-201ENST00000364106 102 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 RNU4-10P-201ENST00000364383 140 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 SNORD1A-201ENST00000364968 72 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 RNU6-574P-201ENST00000384265 107 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 MIR660-201ENST00000385235 97 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 RNU6-383P-201ENST00000410864 94 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.637-201ENST00000459424 114 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 RNU7-28P-201ENST00000516759 62 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 AC127455.1-201ENST00000565496 145 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 AC005357.1-201ENST00000588399 301 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 JPX_2.1-201ENST00000614161 69 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 AC091895.1-201ENST00000624494 256 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 snoU18.1-201ENST00000629629 71 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 U6.104-201ENST00000637979 90 ntBASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.35□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.68-201ENST00000362881 102 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1205P-201ENST00000363625 106 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 Y_RNA.393-201ENST00000383936 102 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 RNU6-1289P-201ENST00000384431 106 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 MIR568-201ENST00000385036 95 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 RNU6-131P-201ENST00000391144 107 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 RNU2-38P-201ENST00000410856 79 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 RNU6-651P-201ENST00000411040 105 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 RNU6-437P-201ENST00000459408 95 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 AC114811.1-201ENST00000507207 168 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 SNORA27.4-201ENST00000516650 95 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 RPL23AP91-201ENST00000569211 455 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 AC015688.6-201ENST00000577737 104 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 SNORD53B-201ENST00000577887 78 ntBASIC1.34□□□□□ -2.19
PDLIM3Q53GG5 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms