Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 SNORD114-26-201ENST00000363543 72 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 RNU2-48P-201ENST00000410694 191 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 Y_RNA.630-201ENST00000411370 108 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.3□□□□□ -2.04
COL4A3Q01955 RNU6-772P-201ENST00000516042 105 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 RNU7-99P-201ENST00000516271 62 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 RNU6-1096P-201ENST00000517089 102 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 SNORA4-201ENST00000584302 138 ntBASIC2.3□□□□□ -2.04
COL4A3Q01955 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.3□□□□□ -2.04
COL4A3Q01955 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
COL4A3Q01955 AC245060.5-201ENST00000610778 3293 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
COL4A3Q01955 RNU1-23P-201ENST00000363361 144 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 RNU6-647P-201ENST00000364243 107 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 MIR562-201ENST00000384894 95 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 MIR221-201ENST00000385135 110 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.29□□□□□ -2.04
COL4A3Q01955 HMGN2P34-201ENST00000437647 269 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 AC023141.11-201ENST00000508864 202 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 RNU6-856P-201ENST00000516959 98 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 RNU1-104P-201ENST00000517280 175 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 CYCSP26-201ENST00000534107 320 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 AC091178.2-201ENST00000584401 117 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 AL670379.3-201ENST00000605040 251 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 AC010297.1-201ENST00000623948 149 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 U6.95-201ENST00000636931 70 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL4A3Q01955 AC091152.2-201ENST00000591628 2569 ntBASIC2.29□□□□□ -2.04
COL4A3Q01955 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL4A3Q01955 MIR6073-201ENST00000352083 89 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 MIR21-201ENST00000362134 72 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 RNU6-508P-201ENST00000363231 103 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 Y_RNA.280-201ENST00000364765 112 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 MIR624-201ENST00000385217 97 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 RNA5SP467-201ENST00000391274 118 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 RNU2-63P-201ENST00000410792 194 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.28□□□□□ -2.04
COL4A3Q01955 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
COL4A3Q01955 AC233266.1-201ENST00000454518 96 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 HMGN1P7-201ENST00000491722 313 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 AC011406.1-201ENST00000512440 370 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 AC242852.1-201ENST00000612151 96 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 XIST_intron.1-201ENST00000619444 68 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 AC244015.1-201ENST00000622301 99 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 U6.98-201ENST00000637157 84 ntBASIC2.28□□□□□ -2.04
COL4A3Q01955 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
COL4A3Q01955 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
COL4A3Q01955 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
COL4A3Q01955 Y_RNA.66-201ENST00000362862 102 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 Y_RNA.178-201ENST00000363832 102 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 Y_RNA.617-201ENST00000410920 90 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 RNA5SP127-201ENST00000411051 133 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.28□□□□□ -2.05
COL4A3Q01955 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 RNU1-142P-201ENST00000516682 145 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 RNU6-295P-201ENST00000516901 104 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 RNU2-60P-201ENST00000517290 128 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.28□□□□□ -2.05
COL4A3Q01955 AC004486.1-201ENST00000546846 233 ntBASIC2.28□□□□□ -2.05
COL4A3Q01955 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
COL4A3Q01955 AC092427.1-202ENST00000430569 476 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 AC009238.1-201ENST00000442165 424 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 AC009237.6-201ENST00000446969 424 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.27□□□□□ -2.05
COL4A3Q01955 RN7SKP19-201ENST00000516016 252 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 RNU6-589P-201ENST00000516485 107 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 SNORA48.11-201ENST00000517015 89 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 Y_RNA.714-201ENST00000517065 90 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 MIR4679-2-201ENST00000578358 77 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 MIR3670-2-201ENST00000582974 65 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 MIR3670-1-201ENST00000584160 65 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 MIR3670-3-201ENST00000584855 65 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 AC073413.2-201ENST00000604332 360 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 MIR3670-4-201ENST00000612260 65 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 AC009831.4-201ENST00000620744 325 ntBASIC2.27□□□□□ -2.05
COL4A3Q01955 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
COL4A3Q01955 AC018630.2-201ENST00000534866 2403 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 MIR340-201ENST00000362125 95 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 snoU2-30.2-201ENST00000362805 70 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 RNU1-51P-201ENST00000365345 176 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 Y_RNA.346-201ENST00000365385 112 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 U8.9-201ENST00000365667 134 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 MIR548A3-201ENST00000385297 97 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 SNRPGP10-201ENST00000432323 225 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 RPS29P12-201ENST00000460178 152 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 RMST_2.1-201ENST00000617263 136 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 MTND5P32-201ENST00000560711 1802 ntBASIC2.26□□□□□ -2.05
COL4A3Q01955 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A3Q01955 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
COL4A3Q01955 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.26□□□□□ -2.05
COL4A3Q01955 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
COL4A3Q01955 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
COL4A3Q01955 SNORA1-201ENST00000384107 130 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 CYCTP-201ENST00000504253 315 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 RNU6-693P-201ENST00000516134 107 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 RNU6-1041P-201ENST00000516254 102 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 SCARNA16.3-201ENST00000516595 184 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 AC007229.1-201ENST00000590455 412 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 AL365205.2-201ENST00000594586 68 ntBASIC2.25□□□□□ -2.05
COL4A3Q01955 AL022345.2-201ENST00000606307 135 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms