Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SNORD68-201ENST00000363214 84 ntBASIC1.13□□□□□ -2.23
PEX3P56589 RNU6-674P-201ENST00000363831 107 ntBASIC1.13□□□□□ -2.23
PEX3P56589 Y_RNA.569-201ENST00000384749 103 ntBASIC1.13□□□□□ -2.23
PEX3P56589 MIR891A-201ENST00000401237 79 ntBASIC1.13□□□□□ -2.23
PEX3P56589 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.13□□□□□ -2.23
PEX3P56589 AL731563.1-201ENST00000442202 214 ntBASIC1.13□□□□□ -2.23
PEX3P56589 AC114811.1-201ENST00000507207 168 ntBASIC1.13□□□□□ -2.23
PEX3P56589 RNU6-922P-201ENST00000516753 99 ntBASIC1.13□□□□□ -2.23
PEX3P56589 AP003733.2-201ENST00000529409 171 ntBASIC1.13□□□□□ -2.23
PEX3P56589 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.13□□□□□ -2.23
PEX3P56589 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.13□□□□□ -2.23
PEX3P56589 AC005357.1-201ENST00000588399 301 ntBASIC1.13□□□□□ -2.23
PEX3P56589 Y_RNA.203-201ENST00000364106 102 ntBASIC1.12□□□□□ -2.23
PEX3P56589 Y_RNA.796-201ENST00000364268 102 ntBASIC1.12□□□□□ -2.23
PEX3P56589 Y_RNA.799-201ENST00000364992 102 ntBASIC1.12□□□□□ -2.23
PEX3P56589 RNU6-326P-201ENST00000365480 107 ntBASIC1.12□□□□□ -2.23
PEX3P56589 MIR618-201ENST00000385287 98 ntBASIC1.12□□□□□ -2.23
PEX3P56589 RNU6-1248P-201ENST00000391096 64 ntBASIC1.12□□□□□ -2.23
PEX3P56589 Y_RNA.621-201ENST00000411065 96 ntBASIC1.12□□□□□ -2.23
PEX3P56589 PIGPP3-201ENST00000425307 415 ntBASIC1.12□□□□□ -2.23
PEX3P56589 Y_RNA.637-201ENST00000459424 114 ntBASIC1.12□□□□□ -2.23
PEX3P56589 NDUFA4P2-201ENST00000489989 244 ntBASIC1.12□□□□□ -2.23
PEX3P56589 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.12□□□□□ -2.23
PEX3P56589 RNU6-1143P-201ENST00000516125 104 ntBASIC1.12□□□□□ -2.23
PEX3P56589 RNA5SP102-201ENST00000516865 106 ntBASIC1.12□□□□□ -2.23
PEX3P56589 GHRLOS.1-201ENST00000610995 70 ntBASIC1.12□□□□□ -2.23
PEX3P56589 MIR8070-201ENST00000616510 88 ntBASIC1.12□□□□□ -2.23
PEX3P56589 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
PEX3P56589 MIR96-201ENST00000362288 78 ntBASIC1.11□□□□□ -2.23
PEX3P56589 Y_RNA.84-201ENST00000363011 104 ntBASIC1.11□□□□□ -2.23
PEX3P56589 RNU6-694P-201ENST00000364071 147 ntBASIC1.11□□□□□ -2.23
PEX3P56589 Y_RNA.217-201ENST00000364214 105 ntBASIC1.11□□□□□ -2.23
PEX3P56589 RNU4-38P-201ENST00000364472 129 ntBASIC1.11□□□□□ -2.23
PEX3P56589 Y_RNA.336-201ENST00000365307 109 ntBASIC1.11□□□□□ -2.23
PEX3P56589 RNU6-763P-201ENST00000390865 106 ntBASIC1.11□□□□□ -2.23
PEX3P56589 MIR548F4-201ENST00000408515 105 ntBASIC1.11□□□□□ -2.23
PEX3P56589 SNRPGP10-201ENST00000432323 225 ntBASIC1.11□□□□□ -2.23
PEX3P56589 DYNLT3P2-201ENST00000442517 295 ntBASIC1.11□□□□□ -2.23
PEX3P56589 RPS29P28-201ENST00000446439 141 ntBASIC1.11□□□□□ -2.23
PEX3P56589 Y_RNA.641-201ENST00000459414 105 ntBASIC1.11□□□□□ -2.23
PEX3P56589 RNY3P15-201ENST00000516297 97 ntBASIC1.11□□□□□ -2.23
PEX3P56589 RNU2-31P-201ENST00000516954 155 ntBASIC1.11□□□□□ -2.23
PEX3P56589 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.11□□□□□ -2.23
PEX3P56589 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
PEX3P56589 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.11□□□□□ -2.23
PEX3P56589 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
PEX3P56589 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
PEX3P56589 Y_RNA.16-201ENST00000362421 102 ntBASIC1.1□□□□□ -2.23
PEX3P56589 RNU6-1272P-201ENST00000362776 107 ntBASIC1.1□□□□□ -2.23
PEX3P56589 SNORA63C-201ENST00000364578 129 ntBASIC1.1□□□□□ -2.23
PEX3P56589 SNORD50B-201ENST00000364995 70 ntBASIC1.1□□□□□ -2.23
PEX3P56589 RNU6-163P-201ENST00000384396 106 ntBASIC1.1□□□□□ -2.23
PEX3P56589 RNU6-1160P-201ENST00000384546 104 ntBASIC1.1□□□□□ -2.23
PEX3P56589 Y_RNA.518-201ENST00000384552 113 ntBASIC1.1□□□□□ -2.23
PEX3P56589 RNU6-1109P-201ENST00000391187 107 ntBASIC1.1□□□□□ -2.23
PEX3P56589 SNORA36B-201ENST00000410438 131 ntBASIC1.1□□□□□ -2.23
PEX3P56589 RNU6-1203P-201ENST00000410703 110 ntBASIC1.1□□□□□ -2.23
PEX3P56589 SNRPGP14-201ENST00000435400 219 ntBASIC1.1□□□□□ -2.23
PEX3P56589 MTND5P22-201ENST00000458380 195 ntBASIC1.1□□□□□ -2.23
PEX3P56589 SNORD11-201ENST00000459124 84 ntBASIC1.1□□□□□ -2.23
PEX3P56589 RNU6-437P-201ENST00000459408 95 ntBASIC1.1□□□□□ -2.23
PEX3P56589 RPL23AP54-201ENST00000495129 419 ntBASIC1.1□□□□□ -2.23
PEX3P56589 AC091959.1-201ENST00000495857 238 ntBASIC1.1□□□□□ -2.23
PEX3P56589 RN7SKP88-201ENST00000516847 250 ntBASIC1.1□□□□□ -2.23
PEX3P56589 7SK.8-201ENST00000612110 250 ntBASIC1.1□□□□□ -2.23
PEX3P56589 7SK.11-201ENST00000615477 250 ntBASIC1.1□□□□□ -2.23
PEX3P56589 7SK.13-201ENST00000622040 250 ntBASIC1.1□□□□□ -2.23
PEX3P56589 UBE2WP1-201ENST00000362030 340 ntBASIC1.09□□□□□ -2.23
PEX3P56589 Y_RNA.152-201ENST00000363578 100 ntBASIC1.09□□□□□ -2.23
PEX3P56589 RNU6-1209P-201ENST00000363655 107 ntBASIC1.09□□□□□ -2.23
PEX3P56589 MIR1298-201ENST00000408783 112 ntBASIC1.09□□□□□ -2.23
PEX3P56589 RNU6-1054P-201ENST00000411293 104 ntBASIC1.09□□□□□ -2.23
PEX3P56589 MRPL35P3-201ENST00000421557 364 ntBASIC1.09□□□□□ -2.23
PEX3P56589 MTND4LP30-201ENST00000454092 297 ntBASIC1.09□□□□□ -2.23
PEX3P56589 snoU13.25-201ENST00000458945 104 ntBASIC1.09□□□□□ -2.23
PEX3P56589 SNORD45.4-201ENST00000516629 73 ntBASIC1.09□□□□□ -2.23
PEX3P56589 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.09□□□□□ -2.23
PEX3P56589 AL021707.8-201ENST00000609428 183 ntBASIC1.09□□□□□ -2.23
PEX3P56589 AP001282.2-201ENST00000616149 309 ntBASIC1.09□□□□□ -2.23
PEX3P56589 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.09□□□□□ -2.24
PEX3P56589 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
PEX3P56589 RNA5SP327-201ENST00000362494 101 ntBASIC1.08□□□□□ -2.24
PEX3P56589 Y_RNA.422-201ENST00000384054 114 ntBASIC1.08□□□□□ -2.24
PEX3P56589 MIR452-201ENST00000385020 85 ntBASIC1.08□□□□□ -2.24
PEX3P56589 RNU6-131P-201ENST00000391144 107 ntBASIC1.08□□□□□ -2.24
PEX3P56589 AL451046.2-201ENST00000403074 277 ntBASIC1.08□□□□□ -2.24
PEX3P56589 MIR1276-201ENST00000408707 83 ntBASIC1.08□□□□□ -2.24
PEX3P56589 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.08□□□□□ -2.24
PEX3P56589 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.08□□□□□ -2.24
PEX3P56589 RPS23P4-201ENST00000487908 423 ntBASIC1.08□□□□□ -2.24
PEX3P56589 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.08□□□□□ -2.24
PEX3P56589 AC090142.3-201ENST00000519012 385 ntBASIC1.08□□□□□ -2.24
PEX3P56589 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.08□□□□□ -2.24
PEX3P56589 AC087685.1-201ENST00000587507 141 ntBASIC1.08□□□□□ -2.24
PEX3P56589 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.08□□□□□ -2.24
PEX3P56589 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.07□□□□□ -2.24
PEX3P56589 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
PEX3P56589 AC134026.1-201ENST00000623249 2239 ntBASIC1.07□□□□□ -2.24
PEX3P56589 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
PEX3P56589 RNU6-899P-201ENST00000363947 107 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 702.9 ms