Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RPL23AP54-201ENST00000495129 419 ntBASIC0.58□□□□□ -2.32
PKNOX1P55347 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.58□□□□□ -2.32
PKNOX1P55347 AL355375.2-201ENST00000574825 175 ntBASIC0.58□□□□□ -2.32
PKNOX1P55347 AC092447.9-201ENST00000603395 144 ntBASIC0.58□□□□□ -2.32
PKNOX1P55347 Y_RNA.772-201ENST00000606692 102 ntBASIC0.58□□□□□ -2.32
PKNOX1P55347 MIR548AY-201ENST00000617669 107 ntBASIC0.58□□□□□ -2.32
PKNOX1P55347 7SK.10-201ENST00000621414 298 ntBASIC0.58□□□□□ -2.32
PKNOX1P55347 SNORD111-201ENST00000408139 94 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 RNU4-30P-201ENST00000410245 143 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 RNA5SP95-201ENST00000410319 137 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 MTND1P14-201ENST00000427400 950 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.57□□□□□ -2.32
PKNOX1P55347 SNORD19B-201ENST00000459623 84 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 RNU6-1110P-201ENST00000516462 101 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 RNU7-110P-201ENST00000516891 62 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 AC004812.1-201ENST00000540773 146 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.57□□□□□ -2.32
PKNOX1P55347 AC087685.1-201ENST00000587507 141 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 AC136443.5-201ENST00000603741 370 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 AL121655.1-201ENST00000605811 308 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 AC011373.1-201ENST00000607270 237 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 SNORD58B-201ENST00000607313 66 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 JPX_2.1-201ENST00000614161 69 ntBASIC0.57□□□□□ -2.32
PKNOX1P55347 Y_RNA.5-201ENST00000362334 102 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 RNU6-937P-201ENST00000384325 106 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 SNORD38C-201ENST00000384381 69 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 Y_RNA.551-201ENST00000384661 102 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 MIR570-201ENST00000384917 97 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 FGF7P4-201ENST00000509595 295 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 RNU6-830P-201ENST00000516353 107 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 AC133485.1-201ENST00000567176 124 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 AC138907.6-201ENST00000568401 126 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 AC025627.3-201ENST00000582078 182 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 AC008507.4-201ENST00000585464 127 ntBASIC0.56□□□□□ -2.32
PKNOX1P55347 AC068700.1-201ENST00000565862 3754 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 Y_RNA.70-201ENST00000362886 110 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 SNORA72.1-201ENST00000363485 129 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 RNU6-1048P-201ENST00000364054 107 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 RNU6-268P-201ENST00000364174 107 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 Y_RNA.252-201ENST00000364556 101 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 SNORD113.3-201ENST00000364630 78 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 RNU6-442P-201ENST00000383968 104 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 MIR1278-201ENST00000408753 81 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 RNU2-14P-201ENST00000411053 191 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 AL160004.2-201ENST00000432935 350 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 AL157398.1-201ENST00000452981 186 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.55□□□□□ -2.32
PKNOX1P55347 SNORA40.14-201ENST00000516543 86 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 CYP3A137P-201ENST00000562436 69 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 Pinc.1-201ENST00000616452 154 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 AC007742.2-201ENST00000618226 398 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 AL606534.2-204ENST00000635008 178 ntBASIC0.55□□□□□ -2.32
PKNOX1P55347 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.54□□□□□ -2.32
PKNOX1P55347 Y_RNA.39-201ENST00000362620 98 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 Y_RNA.80-201ENST00000362996 102 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 Y_RNA.303-201ENST00000364998 94 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 RNU1-115P-201ENST00000365329 160 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 SNORD63-201ENST00000384262 68 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 Y_RNA.485-201ENST00000384395 102 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 SNORD72-201ENST00000390994 80 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 AL603910.2-201ENST00000407268 136 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 RNU6-613P-201ENST00000410412 108 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 RNU6-994P-201ENST00000410507 111 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 AC024067.1-201ENST00000426199 223 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 RNU7-141P-201ENST00000459304 62 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 Y_RNA.661-201ENST00000516003 99 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 AC093027.1-201ENST00000546698 429 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
PKNOX1P55347 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.54□□□□□ -2.32
PKNOX1P55347 Y_RNA.143-201ENST00000363520 106 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 U8.17-201ENST00000391292 132 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 MIR1827-201ENST00000408549 66 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 RNU6-130P-201ENST00000411112 103 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 AC244098.3-201ENST00000424803 96 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 Y_RNA.638-201ENST00000459374 113 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 RNU6-437P-201ENST00000459408 95 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 AC012433.1-201ENST00000588916 398 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 RPS29P30-201ENST00000600975 111 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 AL138825.1-201ENST00000618587 192 ntBASIC0.53□□□□□ -2.32
PKNOX1P55347 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
PKNOX1P55347 RNU4-80P-201ENST00000363200 141 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 RNU6-674P-201ENST00000363831 107 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 RNU6-801P-201ENST00000364087 105 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 Y_RNA.813-201ENST00000364639 102 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 Y_RNA.286-201ENST00000364813 102 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 Y_RNA.370-201ENST00000365589 108 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 Y_RNA.383-201ENST00000383855 97 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 Y_RNA.439-201ENST00000384119 94 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 SNORA2B-201ENST00000384583 137 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 MTCO2P33-201ENST00000402100 465 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 SNORA36B-201ENST00000410438 131 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.52□□□□□ -2.33
PKNOX1P55347 AC067940.1-201ENST00000458411 300 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 SNORD11-201ENST00000459124 84 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 RNU6-875P-201ENST00000516488 106 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 RNU7-181P-201ENST00000517234 74 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 RPL23AP91-201ENST00000569211 455 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 MIR548AO-201ENST00000579992 96 ntBASIC0.52□□□□□ -2.33
PKNOX1P55347 AC005357.1-201ENST00000588399 301 ntBASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 146.3 ms