Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
CTCFP49711 MIRLET7C-201ENST00000362160 84 ntBASIC1.61□□□□□ -2.15
CTCFP49711 RNU6-290P-201ENST00000365212 101 ntBASIC1.61□□□□□ -2.15
CTCFP49711 RNU6-1160P-201ENST00000384546 104 ntBASIC1.61□□□□□ -2.15
CTCFP49711 Y_RNA.541-201ENST00000384640 113 ntBASIC1.61□□□□□ -2.15
CTCFP49711 RNU6-1143P-201ENST00000516125 104 ntBASIC1.61□□□□□ -2.15
CTCFP49711 RNU6-191P-201ENST00000516295 94 ntBASIC1.61□□□□□ -2.15
CTCFP49711 AP003733.2-201ENST00000529409 171 ntBASIC1.61□□□□□ -2.15
CTCFP49711 AC006504.6-201ENST00000590142 199 ntBASIC1.61□□□□□ -2.15
CTCFP49711 PRR13P7-201ENST00000605538 430 ntBASIC1.61□□□□□ -2.15
CTCFP49711 SNORA63C-201ENST00000364578 129 ntBASIC1.6□□□□□ -2.15
CTCFP49711 SNORA72-201ENST00000384339 132 ntBASIC1.6□□□□□ -2.15
CTCFP49711 Y_RNA.569-201ENST00000384749 103 ntBASIC1.6□□□□□ -2.15
CTCFP49711 AC104332.1-201ENST00000440471 797 ntBASIC1.6□□□□□ -2.15
CTCFP49711 AC027119.1-201ENST00000440877 241 ntBASIC1.6□□□□□ -2.15
CTCFP49711 AL731563.1-201ENST00000442202 214 ntBASIC1.6□□□□□ -2.15
CTCFP49711 SNRPGP13-201ENST00000442212 177 ntBASIC1.6□□□□□ -2.15
CTCFP49711 RNU6-1132P-201ENST00000459214 107 ntBASIC1.6□□□□□ -2.15
CTCFP49711 SUMO2P16-201ENST00000519475 264 ntBASIC1.6□□□□□ -2.15
CTCFP49711 AL160236.1-201ENST00000556317 195 ntBASIC1.6□□□□□ -2.15
CTCFP49711 AL590095.2-201ENST00000604136 117 ntBASIC1.6□□□□□ -2.15
CTCFP49711 SNORD3E-202ENST00000627253 216 ntBASIC1.6□□□□□ -2.15
CTCFP49711 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CTCFP49711 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
CTCFP49711 U8.1-201ENST00000362843 134 ntBASIC1.59□□□□□ -2.15
CTCFP49711 RNU6-801P-201ENST00000364087 105 ntBASIC1.59□□□□□ -2.15
CTCFP49711 MIR606-201ENST00000384851 96 ntBASIC1.59□□□□□ -2.15
CTCFP49711 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.59□□□□□ -2.15
CTCFP49711 MIR1304-201ENST00000408243 91 ntBASIC1.59□□□□□ -2.15
CTCFP49711 Y_RNA.621-201ENST00000411065 96 ntBASIC1.59□□□□□ -2.15
CTCFP49711 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.59□□□□□ -2.15
CTCFP49711 MTCO1P5-201ENST00000433573 344 ntBASIC1.59□□□□□ -2.15
CTCFP49711 AC079140.2-201ENST00000506193 142 ntBASIC1.59□□□□□ -2.15
CTCFP49711 RNU6-113P-201ENST00000516653 101 ntBASIC1.59□□□□□ -2.15
CTCFP49711 AC136628.3-201ENST00000521868 290 ntBASIC1.59□□□□□ -2.15
CTCFP49711 AP003357.1-201ENST00000604497 148 ntBASIC1.59□□□□□ -2.15
CTCFP49711 AL591926.4-201ENST00000616895 298 ntBASIC1.59□□□□□ -2.15
CTCFP49711 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.59□□□□□ -2.16
CTCFP49711 RNU1-133P-201ENST00000364867 167 ntBASIC1.58□□□□□ -2.16
CTCFP49711 U8.7-201ENST00000364940 136 ntBASIC1.58□□□□□ -2.16
CTCFP49711 RNA5SP259-201ENST00000365541 109 ntBASIC1.58□□□□□ -2.16
CTCFP49711 MIR320A-201ENST00000385302 82 ntBASIC1.58□□□□□ -2.16
CTCFP49711 RNU6-1248P-201ENST00000391096 64 ntBASIC1.58□□□□□ -2.16
CTCFP49711 RNU6-1109P-201ENST00000391187 107 ntBASIC1.58□□□□□ -2.16
CTCFP49711 RNU2-14P-201ENST00000411053 191 ntBASIC1.58□□□□□ -2.16
CTCFP49711 RPS27P16-201ENST00000425758 201 ntBASIC1.58□□□□□ -2.16
CTCFP49711 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.58□□□□□ -2.16
CTCFP49711 RNU7-115P-201ENST00000516433 55 ntBASIC1.58□□□□□ -2.16
CTCFP49711 RNU7-116P-201ENST00000516940 62 ntBASIC1.58□□□□□ -2.16
CTCFP49711 Y_RNA.720-201ENST00000517166 92 ntBASIC1.58□□□□□ -2.16
CTCFP49711 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.58□□□□□ -2.16
CTCFP49711 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.58□□□□□ -2.16
CTCFP49711 AC024405.2-202ENST00000532731 184 ntBASIC1.58□□□□□ -2.16
CTCFP49711 MIR4778-201ENST00000577635 80 ntBASIC1.58□□□□□ -2.16
CTCFP49711 AL365434.2-201ENST00000607979 234 ntBASIC1.58□□□□□ -2.16
CTCFP49711 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.58□□□□□ -2.16
CTCFP49711 AL121890.5-201ENST00000620848 304 ntBASIC1.58□□□□□ -2.16
CTCFP49711 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
CTCFP49711 RNU6-1048P-201ENST00000364054 107 ntBASIC1.57□□□□□ -2.16
CTCFP49711 U8.5-201ENST00000364528 136 ntBASIC1.57□□□□□ -2.16
CTCFP49711 Y_RNA.253-201ENST00000364562 112 ntBASIC1.57□□□□□ -2.16
CTCFP49711 SNORA72.4-201ENST00000384174 132 ntBASIC1.57□□□□□ -2.16
CTCFP49711 SNORA26.5-201ENST00000391215 123 ntBASIC1.57□□□□□ -2.16
CTCFP49711 RPL30P13-201ENST00000418873 348 ntBASIC1.57□□□□□ -2.16
CTCFP49711 DYNLT3P2-201ENST00000442517 295 ntBASIC1.57□□□□□ -2.16
CTCFP49711 MTND5P22-201ENST00000458380 195 ntBASIC1.57□□□□□ -2.16
CTCFP49711 RPS29P23-201ENST00000458635 123 ntBASIC1.57□□□□□ -2.16
CTCFP49711 MTATP8P1-201ENST00000467115 207 ntBASIC1.57□□□□□ -2.16
CTCFP49711 AC117454.1-201ENST00000491120 168 ntBASIC1.57□□□□□ -2.16
CTCFP49711 AC127455.1-201ENST00000565496 145 ntBASIC1.57□□□□□ -2.16
CTCFP49711 POLR3GP1-201ENST00000594073 261 ntBASIC1.57□□□□□ -2.16
CTCFP49711 MIR548AY-201ENST00000617669 107 ntBASIC1.57□□□□□ -2.16
CTCFP49711 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.57□□□□□ -2.16
CTCFP49711 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CTCFP49711 Y_RNA.16-201ENST00000362421 102 ntBASIC1.56□□□□□ -2.16
CTCFP49711 Y_RNA.84-201ENST00000363011 104 ntBASIC1.56□□□□□ -2.16
CTCFP49711 RNA5SP62-201ENST00000363457 110 ntBASIC1.56□□□□□ -2.16
CTCFP49711 RNU6-326P-201ENST00000365480 107 ntBASIC1.56□□□□□ -2.16
CTCFP49711 MIR548F4-201ENST00000408515 105 ntBASIC1.56□□□□□ -2.16
CTCFP49711 AC023790.1-201ENST00000482174 347 ntBASIC1.56□□□□□ -2.16
CTCFP49711 RNU2-31P-201ENST00000516954 155 ntBASIC1.56□□□□□ -2.16
CTCFP49711 RNU6-1116P-201ENST00000517269 99 ntBASIC1.56□□□□□ -2.16
CTCFP49711 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.56□□□□□ -2.16
CTCFP49711 MIR3660-201ENST00000584845 100 ntBASIC1.56□□□□□ -2.16
CTCFP49711 MIR4762-201ENST00000585261 75 ntBASIC1.56□□□□□ -2.16
CTCFP49711 MIR26B-201ENST00000362251 77 ntBASIC1.55□□□□□ -2.16
CTCFP49711 Y_RNA.85-201ENST00000363014 111 ntBASIC1.55□□□□□ -2.16
CTCFP49711 RNA5SP257-201ENST00000363023 116 ntBASIC1.55□□□□□ -2.16
CTCFP49711 SNORD68-201ENST00000363214 84 ntBASIC1.55□□□□□ -2.16
CTCFP49711 SNORD26-201ENST00000384147 75 ntBASIC1.55□□□□□ -2.16
CTCFP49711 RNU6-738P-201ENST00000384531 106 ntBASIC1.55□□□□□ -2.16
CTCFP49711 RNU7-141P-201ENST00000459304 62 ntBASIC1.55□□□□□ -2.16
CTCFP49711 MIR4719-201ENST00000585233 84 ntBASIC1.55□□□□□ -2.16
CTCFP49711 MIR7974-201ENST00000615835 79 ntBASIC1.55□□□□□ -2.16
CTCFP49711 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
CTCFP49711 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
CTCFP49711 Y_RNA.145-201ENST00000363527 102 ntBASIC1.54□□□□□ -2.16
CTCFP49711 RNU6-1065P-201ENST00000384513 106 ntBASIC1.54□□□□□ -2.16
CTCFP49711 Y_RNA.512-201ENST00000384518 102 ntBASIC1.54□□□□□ -2.16
CTCFP49711 MIR522-201ENST00000385071 87 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms