Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 Y_RNA.216-201ENST00000364205 93 ntBASIC1.06□□□□□ -2.24
CDX1P47902 Y_RNA.418-201ENST00000384029 102 ntBASIC1.06□□□□□ -2.24
CDX1P47902 MIR520C-201ENST00000385005 87 ntBASIC1.06□□□□□ -2.24
CDX1P47902 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.06□□□□□ -2.24
CDX1P47902 SNORA74.3-201ENST00000517108 154 ntBASIC1.06□□□□□ -2.24
CDX1P47902 AC131281.1-201ENST00000522984 164 ntBASIC1.06□□□□□ -2.24
CDX1P47902 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.06□□□□□ -2.24
CDX1P47902 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.06□□□□□ -2.24
CDX1P47902 AL096861.1-201ENST00000610899 123 ntBASIC1.06□□□□□ -2.24
CDX1P47902 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.06□□□□□ -2.24
CDX1P47902 MIR337-201ENST00000362281 93 ntBASIC1.05□□□□□ -2.24
CDX1P47902 RNY1P10-201ENST00000363268 113 ntBASIC1.05□□□□□ -2.24
CDX1P47902 RNU6-899P-201ENST00000363947 107 ntBASIC1.05□□□□□ -2.24
CDX1P47902 Y_RNA.796-201ENST00000364268 102 ntBASIC1.05□□□□□ -2.24
CDX1P47902 Y_RNA.799-201ENST00000364992 102 ntBASIC1.05□□□□□ -2.24
CDX1P47902 SNORA26.5-201ENST00000391215 123 ntBASIC1.05□□□□□ -2.24
CDX1P47902 MIR1278-201ENST00000408753 81 ntBASIC1.05□□□□□ -2.24
CDX1P47902 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.05□□□□□ -2.24
CDX1P47902 TRMT112P2-201ENST00000512910 132 ntBASIC1.05□□□□□ -2.24
CDX1P47902 RNU6-764P-201ENST00000516396 105 ntBASIC1.05□□□□□ -2.24
CDX1P47902 RNU6-1007P-201ENST00000516586 107 ntBASIC1.05□□□□□ -2.24
CDX1P47902 RPL23AP91-201ENST00000569211 455 ntBASIC1.05□□□□□ -2.24
CDX1P47902 AC087685.1-201ENST00000587507 141 ntBASIC1.05□□□□□ -2.24
CDX1P47902 AC037487.3-201ENST00000606668 112 ntBASIC1.05□□□□□ -2.24
CDX1P47902 AL157834.3-201ENST00000615543 103 ntBASIC1.05□□□□□ -2.24
CDX1P47902 AL353770.2-201ENST00000620024 78 ntBASIC1.05□□□□□ -2.24
CDX1P47902 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
CDX1P47902 Y_RNA.19-201ENST00000362462 99 ntBASIC1.04□□□□□ -2.24
CDX1P47902 Y_RNA.105-201ENST00000363182 111 ntBASIC1.04□□□□□ -2.24
CDX1P47902 Y_RNA.136-201ENST00000363444 102 ntBASIC1.04□□□□□ -2.24
CDX1P47902 Y_RNA.210-201ENST00000364161 110 ntBASIC1.04□□□□□ -2.24
CDX1P47902 RNU6-442P-201ENST00000383968 104 ntBASIC1.04□□□□□ -2.24
CDX1P47902 SNORD38C-201ENST00000384381 69 ntBASIC1.04□□□□□ -2.24
CDX1P47902 SNORA80D-201ENST00000384488 135 ntBASIC1.04□□□□□ -2.24
CDX1P47902 SNORA53-201ENST00000391141 249 ntBASIC1.04□□□□□ -2.24
CDX1P47902 RNU6-321P-201ENST00000410912 106 ntBASIC1.04□□□□□ -2.24
CDX1P47902 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.04□□□□□ -2.24
CDX1P47902 ELOCP20-201ENST00000422460 345 ntBASIC1.04□□□□□ -2.24
CDX1P47902 MRPS35P2-201ENST00000508242 191 ntBASIC1.04□□□□□ -2.24
CDX1P47902 AC020661.2-201ENST00000560114 134 ntBASIC1.04□□□□□ -2.24
CDX1P47902 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.04□□□□□ -2.24
CDX1P47902 MIR3192-201ENST00000584920 77 ntBASIC1.04□□□□□ -2.24
CDX1P47902 AL355297.3-201ENST00000604082 446 ntBASIC1.04□□□□□ -2.24
CDX1P47902 RNU6-674P-201ENST00000363831 107 ntBASIC1.03□□□□□ -2.24
CDX1P47902 Y_RNA.214-201ENST00000364201 112 ntBASIC1.03□□□□□ -2.24
CDX1P47902 Y_RNA.327-201ENST00000365201 102 ntBASIC1.03□□□□□ -2.24
CDX1P47902 RNU6-969P-201ENST00000383900 105 ntBASIC1.03□□□□□ -2.24
CDX1P47902 SNORA70.7-201ENST00000384159 133 ntBASIC1.03□□□□□ -2.24
CDX1P47902 RNU6-514P-201ENST00000384208 107 ntBASIC1.03□□□□□ -2.24
CDX1P47902 SNORD12-201ENST00000391002 90 ntBASIC1.03□□□□□ -2.24
CDX1P47902 Y_RNA.581-201ENST00000391017 97 ntBASIC1.03□□□□□ -2.24
CDX1P47902 RNU6-121P-201ENST00000410525 99 ntBASIC1.03□□□□□ -2.24
CDX1P47902 MTCO1P5-201ENST00000433573 344 ntBASIC1.03□□□□□ -2.24
CDX1P47902 RNU1-123P-201ENST00000458950 160 ntBASIC1.03□□□□□ -2.24
CDX1P47902 AC098869.1-201ENST00000481627 292 ntBASIC1.03□□□□□ -2.24
CDX1P47902 AC005840.1-201ENST00000498412 377 ntBASIC1.03□□□□□ -2.24
CDX1P47902 SNORD79.1-201ENST00000516069 84 ntBASIC1.03□□□□□ -2.24
CDX1P47902 SNORD116-28-201ENST00000516123 91 ntBASIC1.03□□□□□ -2.24
CDX1P47902 RNU6-1143P-201ENST00000516125 104 ntBASIC1.03□□□□□ -2.24
CDX1P47902 Y_RNA.676-201ENST00000516393 96 ntBASIC1.03□□□□□ -2.24
CDX1P47902 Y_RNA.701-201ENST00000516812 110 ntBASIC1.03□□□□□ -2.24
CDX1P47902 AC113195.1-201ENST00000579952 141 ntBASIC1.03□□□□□ -2.24
CDX1P47902 AC005357.1-201ENST00000588399 301 ntBASIC1.03□□□□□ -2.24
CDX1P47902 AL356055.1-201ENST00000602528 446 ntBASIC1.03□□□□□ -2.24
CDX1P47902 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.03□□□□□ -2.24
CDX1P47902 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.02□□□□□ -2.25
CDX1P47902 RNU6-1205P-201ENST00000363625 106 ntBASIC1.02□□□□□ -2.25
CDX1P47902 RNU6-290P-201ENST00000365212 101 ntBASIC1.02□□□□□ -2.25
CDX1P47902 Y_RNA.363-201ENST00000365529 113 ntBASIC1.02□□□□□ -2.25
CDX1P47902 RNU6-763P-201ENST00000390865 106 ntBASIC1.02□□□□□ -2.25
CDX1P47902 MRPL35P3-201ENST00000421557 364 ntBASIC1.02□□□□□ -2.25
CDX1P47902 AL591704.2-201ENST00000421658 181 ntBASIC1.02□□□□□ -2.25
CDX1P47902 AC063976.4-201ENST00000421971 163 ntBASIC1.02□□□□□ -2.25
CDX1P47902 MTND4LP30-201ENST00000454092 297 ntBASIC1.02□□□□□ -2.25
CDX1P47902 AC023449.1-201ENST00000454464 154 ntBASIC1.02□□□□□ -2.25
CDX1P47902 AC245047.8-201ENST00000456455 284 ntBASIC1.02□□□□□ -2.25
CDX1P47902 SNORD123-201ENST00000459473 70 ntBASIC1.02□□□□□ -2.25
CDX1P47902 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.02□□□□□ -2.25
CDX1P47902 RNU2-31P-201ENST00000516954 155 ntBASIC1.02□□□□□ -2.25
CDX1P47902 MIR4764-201ENST00000580680 88 ntBASIC1.02□□□□□ -2.25
CDX1P47902 MIR4680-201ENST00000580906 66 ntBASIC1.02□□□□□ -2.25
CDX1P47902 PRELID3BP2-201ENST00000605362 201 ntBASIC1.02□□□□□ -2.25
CDX1P47902 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
CDX1P47902 SNORA25.1-201ENST00000362326 128 ntBASIC1.01□□□□□ -2.25
CDX1P47902 RNU1-124P-201ENST00000363861 145 ntBASIC1.01□□□□□ -2.25
CDX1P47902 RNU6-392P-201ENST00000364926 101 ntBASIC1.01□□□□□ -2.25
CDX1P47902 RNU6-144P-201ENST00000383951 107 ntBASIC1.01□□□□□ -2.25
CDX1P47902 SNORA40.6-201ENST00000391153 128 ntBASIC1.01□□□□□ -2.25
CDX1P47902 MIR1285-1-201ENST00000408593 84 ntBASIC1.01□□□□□ -2.25
CDX1P47902 AC002429.1-201ENST00000437672 148 ntBASIC1.01□□□□□ -2.25
CDX1P47902 NDUFA4P2-201ENST00000489989 244 ntBASIC1.01□□□□□ -2.25
CDX1P47902 RNU7-43P-201ENST00000516554 64 ntBASIC1.01□□□□□ -2.25
CDX1P47902 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.01□□□□□ -2.25
CDX1P47902 MIR3660-201ENST00000584845 100 ntBASIC1.01□□□□□ -2.25
CDX1P47902 AC044792.1-201ENST00000593294 196 ntBASIC1.01□□□□□ -2.25
CDX1P47902 AL391903.3-201ENST00000612158 163 ntBASIC1.01□□□□□ -2.25
CDX1P47902 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
CDX1P47902 AC008163.1-202ENST00000636004 2889 ntBASIC1□□□□□ -2.25
CDX1P47902 Y_RNA.4-201ENST00000362333 112 ntBASIC1□□□□□ -2.25
CDX1P47902 snoU2_19.2-201ENST00000363024 80 ntBASIC1□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 195.8 ms