Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.31□□□□□ -2.2
SOX3P41225 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.31□□□□□ -2.2
SOX3P41225 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.3□□□□□ -2.2
SOX3P41225 AC134026.1-201ENST00000623249 2239 ntBASIC1.3□□□□□ -2.2
SOX3P41225 UBE2WP1-201ENST00000362030 340 ntBASIC1.3□□□□□ -2.2
SOX3P41225 MIR335-201ENST00000362173 94 ntBASIC1.3□□□□□ -2.2
SOX3P41225 Y_RNA.117-201ENST00000363294 101 ntBASIC1.3□□□□□ -2.2
SOX3P41225 RNU6-899P-201ENST00000363947 107 ntBASIC1.3□□□□□ -2.2
SOX3P41225 Y_RNA.217-201ENST00000364214 105 ntBASIC1.3□□□□□ -2.2
SOX3P41225 U8.5-201ENST00000364528 136 ntBASIC1.3□□□□□ -2.2
SOX3P41225 Y_RNA.253-201ENST00000364562 112 ntBASIC1.3□□□□□ -2.2
SOX3P41225 RNU6-514P-201ENST00000384208 107 ntBASIC1.3□□□□□ -2.2
SOX3P41225 RNU6-463P-201ENST00000384340 107 ntBASIC1.3□□□□□ -2.2
SOX3P41225 RNU6-763P-201ENST00000390865 106 ntBASIC1.3□□□□□ -2.2
SOX3P41225 SNORA36B-201ENST00000410438 131 ntBASIC1.3□□□□□ -2.2
SOX3P41225 AC245517.4-201ENST00000448601 281 ntBASIC1.3□□□□□ -2.2
SOX3P41225 Y_RNA.641-201ENST00000459414 105 ntBASIC1.3□□□□□ -2.2
SOX3P41225 HMGN1P7-201ENST00000491722 313 ntBASIC1.3□□□□□ -2.2
SOX3P41225 RPL23AP54-201ENST00000495129 419 ntBASIC1.3□□□□□ -2.2
SOX3P41225 AC079140.2-201ENST00000506193 142 ntBASIC1.3□□□□□ -2.2
SOX3P41225 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.3□□□□□ -2.2
SOX3P41225 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.3□□□□□ -2.2
SOX3P41225 MIR4421-201ENST00000578133 69 ntBASIC1.3□□□□□ -2.2
SOX3P41225 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
SOX3P41225 7SK.10-201ENST00000621414 298 ntBASIC1.3□□□□□ -2.2
SOX3P41225 U6.104-201ENST00000637979 90 ntBASIC1.3□□□□□ -2.2
SOX3P41225 AL391987.6-201ENST00000305671 199 ntBASIC1.29□□□□□ -2.2
SOX3P41225 U8.1-201ENST00000362843 134 ntBASIC1.29□□□□□ -2.2
SOX3P41225 SNORD68-201ENST00000363214 84 ntBASIC1.29□□□□□ -2.2
SOX3P41225 RNU6-674P-201ENST00000363831 107 ntBASIC1.29□□□□□ -2.2
SOX3P41225 Y_RNA.203-201ENST00000364106 102 ntBASIC1.29□□□□□ -2.2
SOX3P41225 RNA5SP259-201ENST00000365541 109 ntBASIC1.29□□□□□ -2.2
SOX3P41225 RNU6-196P-201ENST00000384315 107 ntBASIC1.29□□□□□ -2.2
SOX3P41225 MIR522-201ENST00000385071 87 ntBASIC1.29□□□□□ -2.2
SOX3P41225 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.29□□□□□ -2.2
SOX3P41225 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.29□□□□□ -2.2
SOX3P41225 AC027119.1-201ENST00000440877 241 ntBASIC1.29□□□□□ -2.2
SOX3P41225 RNU7-12P-201ENST00000516030 62 ntBASIC1.29□□□□□ -2.2
SOX3P41225 AL008718.3-201ENST00000610217 321 ntBASIC1.29□□□□□ -2.2
SOX3P41225 AC027279.3-201ENST00000625055 122 ntBASIC1.29□□□□□ -2.2
SOX3P41225 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.28□□□□□ -2.2
SOX3P41225 Y_RNA.14-201ENST00000362415 103 ntBASIC1.28□□□□□ -2.2
SOX3P41225 RNU6-1272P-201ENST00000362776 107 ntBASIC1.28□□□□□ -2.2
SOX3P41225 SNORA7.1-201ENST00000363750 139 ntBASIC1.28□□□□□ -2.2
SOX3P41225 RNU6-740P-201ENST00000364734 105 ntBASIC1.28□□□□□ -2.2
SOX3P41225 RNU6-144P-201ENST00000383951 107 ntBASIC1.28□□□□□ -2.2
SOX3P41225 Y_RNA.562-201ENST00000384695 113 ntBASIC1.28□□□□□ -2.2
SOX3P41225 MTCO2P33-201ENST00000402100 465 ntBASIC1.28□□□□□ -2.2
SOX3P41225 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.28□□□□□ -2.2
SOX3P41225 RPS29P23-201ENST00000458635 123 ntBASIC1.28□□□□□ -2.2
SOX3P41225 RNU6-437P-201ENST00000459408 95 ntBASIC1.28□□□□□ -2.2
SOX3P41225 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.28□□□□□ -2.2
SOX3P41225 MIR3149-201ENST00000584629 83 ntBASIC1.28□□□□□ -2.2
SOX3P41225 AC013791.1-201ENST00000616619 62 ntBASIC1.28□□□□□ -2.2
SOX3P41225 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
SOX3P41225 RNU6-833P-201ENST00000363486 107 ntBASIC1.27□□□□□ -2.21
SOX3P41225 Y_RNA.307-201ENST00000365022 117 ntBASIC1.27□□□□□ -2.21
SOX3P41225 RNU6-969P-201ENST00000383900 105 ntBASIC1.27□□□□□ -2.21
SOX3P41225 Y_RNA.452-201ENST00000384202 108 ntBASIC1.27□□□□□ -2.21
SOX3P41225 Y_RNA.477-201ENST00000384352 108 ntBASIC1.27□□□□□ -2.21
SOX3P41225 Y_RNA.539-201ENST00000384635 107 ntBASIC1.27□□□□□ -2.21
SOX3P41225 AL603910.2-201ENST00000407268 136 ntBASIC1.27□□□□□ -2.21
SOX3P41225 RNU6-1132P-201ENST00000459214 107 ntBASIC1.27□□□□□ -2.21
SOX3P41225 CYCTP-201ENST00000504253 315 ntBASIC1.27□□□□□ -2.21
SOX3P41225 RNA5SP445-201ENST00000515889 115 ntBASIC1.27□□□□□ -2.21
SOX3P41225 RNU6-902P-201ENST00000517212 91 ntBASIC1.27□□□□□ -2.21
SOX3P41225 RNU6-1116P-201ENST00000517269 99 ntBASIC1.27□□□□□ -2.21
SOX3P41225 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.27□□□□□ -2.21
SOX3P41225 MIR4778-201ENST00000577635 80 ntBASIC1.27□□□□□ -2.21
SOX3P41225 MIR5692C2-201ENST00000577959 77 ntBASIC1.27□□□□□ -2.21
SOX3P41225 AC005357.1-201ENST00000588399 301 ntBASIC1.27□□□□□ -2.21
SOX3P41225 AC120024.3-201ENST00000603167 156 ntBASIC1.27□□□□□ -2.21
SOX3P41225 AP001485.1-201ENST00000604799 199 ntBASIC1.27□□□□□ -2.21
SOX3P41225 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.27□□□□□ -2.21
SOX3P41225 snoU18.1-201ENST00000629629 71 ntBASIC1.27□□□□□ -2.21
SOX3P41225 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.26□□□□□ -2.21
SOX3P41225 Y_RNA.76-201ENST00000362931 109 ntBASIC1.26□□□□□ -2.21
SOX3P41225 RNU6-199P-201ENST00000362954 107 ntBASIC1.26□□□□□ -2.21
SOX3P41225 Y_RNA.796-201ENST00000364268 102 ntBASIC1.26□□□□□ -2.21
SOX3P41225 Y_RNA.275-201ENST00000364726 110 ntBASIC1.26□□□□□ -2.21
SOX3P41225 Y_RNA.799-201ENST00000364992 102 ntBASIC1.26□□□□□ -2.21
SOX3P41225 MIR653-201ENST00000385279 96 ntBASIC1.26□□□□□ -2.21
SOX3P41225 MIR891A-201ENST00000401237 79 ntBASIC1.26□□□□□ -2.21
SOX3P41225 MLLT10P1-201ENST00000418346 262 ntBASIC1.26□□□□□ -2.21
SOX3P41225 SNRPGP10-201ENST00000432323 225 ntBASIC1.26□□□□□ -2.21
SOX3P41225 AC093850.1-201ENST00000454121 251 ntBASIC1.26□□□□□ -2.21
SOX3P41225 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.26□□□□□ -2.21
SOX3P41225 RNU6-1053P-201ENST00000515930 101 ntBASIC1.26□□□□□ -2.21
SOX3P41225 MIR2681-201ENST00000581814 105 ntBASIC1.26□□□□□ -2.21
SOX3P41225 MIR3128-201ENST00000581957 66 ntBASIC1.26□□□□□ -2.21
SOX3P41225 AC011921.3-201ENST00000605540 361 ntBASIC1.26□□□□□ -2.21
SOX3P41225 AL365434.2-201ENST00000607979 234 ntBASIC1.26□□□□□ -2.21
SOX3P41225 U2.14-201ENST00000615943 113 ntBASIC1.26□□□□□ -2.21
SOX3P41225 U4.1-201ENST00000620349 87 ntBASIC1.26□□□□□ -2.21
SOX3P41225 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.26□□□□□ -2.21
SOX3P41225 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.26□□□□□ -2.21
SOX3P41225 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.25□□□□□ -2.21
SOX3P41225 Y_RNA.44-201ENST00000362676 108 ntBASIC1.25□□□□□ -2.21
SOX3P41225 RNU6-1205P-201ENST00000363625 106 ntBASIC1.25□□□□□ -2.21
SOX3P41225 RNU6-1209P-201ENST00000363655 107 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms