Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-502P-201ENST00000362419 108 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 RNU6-727P-201ENST00000363592 107 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 RNU6-715P-201ENST00000365204 103 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 MIR487A-201ENST00000385009 80 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 MTCYBP36-201ENST00000404146 440 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 AC073464.1-201ENST00000429823 534 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC-1.49□□□□□ -2.65
CUX1P39880 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-1.49□□□□□ -2.65
CUX1P39880 MIR4491-201ENST00000581087 68 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 BNIP3P40-201ENST00000596017 556 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 AP000942.4-201ENST00000604811 241 ntBASIC-1.49□□□□□ -2.65
CUX1P39880 RNU6-179P-201ENST00000363350 107 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 RNU6-291P-201ENST00000384720 107 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 MIR147A-201ENST00000385079 72 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 AL512286.1-201ENST00000439244 400 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC-1.5□□□□□ -2.65
CUX1P39880 MIR4307-201ENST00000582802 84 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC-1.5□□□□□ -2.65
CUX1P39880 RNU6-434P-201ENST00000384376 107 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 RNU6-393P-201ENST00000384475 107 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 RNU6-900P-201ENST00000384498 102 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 RNU6-602P-201ENST00000411155 105 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-1.5□□□□□ -2.65
CUX1P39880 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC-1.5□□□□□ -2.65
CUX1P39880 Y_RNA.697-201ENST00000516776 113 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 AC026421.1-201ENST00000519101 163 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 AC091144.1-201ENST00000519573 138 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 MIR3941-201ENST00000582572 103 ntBASIC-1.5□□□□□ -2.65
CUX1P39880 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-1.5□□□□□ -2.65
CUX1P39880 RNU6-509P-201ENST00000363519 107 ntBASIC-1.51□□□□□ -2.65
CUX1P39880 Y_RNA.450-201ENST00000384198 113 ntBASIC-1.51□□□□□ -2.65
CUX1P39880 MIR181B2-201ENST00000385004 89 ntBASIC-1.51□□□□□ -2.65
CUX1P39880 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC-1.51□□□□□ -2.65
CUX1P39880 SNORA40.2-201ENST00000390847 128 ntBASIC-1.51□□□□□ -2.65
CUX1P39880 MTCO2P29-201ENST00000465212 189 ntBASIC-1.51□□□□□ -2.65
CUX1P39880 SNORA25.10-201ENST00000515926 124 ntBASIC-1.51□□□□□ -2.65
CUX1P39880 MTND3P13-201ENST00000574391 343 ntBASIC-1.51□□□□□ -2.65
CUX1P39880 Z97988.1-201ENST00000637697 135 ntBASIC-1.51□□□□□ -2.65
CUX1P39880 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-1.51□□□□□ -2.65
CUX1P39880 SNORD114-7-201ENST00000362520 77 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 RNU6-1287P-201ENST00000362914 107 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 RNA5SP245-201ENST00000364239 121 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 RNU6-865P-201ENST00000364772 107 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 Y_RNA.539-201ENST00000384635 107 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 RNU6-1060P-201ENST00000384664 107 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 SNORD41.1-201ENST00000391000 69 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 U8.19-201ENST00000459095 133 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 U8.22-201ENST00000459141 133 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 AC018710.1-201ENST00000506509 158 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC-1.52□□□□□ -2.65
CUX1P39880 RNU6-551P-201ENST00000516661 103 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 RNU6-958P-201ENST00000516995 106 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 AL354950.2-201ENST00000617939 290 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 AC068880.4-201ENST00000623082 495 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 AC022418.1-201ENST00000624118 445 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 AC019226.2-201ENST00000625973 424 ntBASIC-1.52□□□□□ -2.65
CUX1P39880 RNU6-226P-201ENST00000363778 107 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 Y_RNA.179-201ENST00000363844 90 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 RNU6-280P-201ENST00000364145 104 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 SNORA24-201ENST00000384096 131 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 RNU6-708P-201ENST00000384217 107 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 AL031667.1-201ENST00000440222 725 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 RNU7-67P-201ENST00000459003 62 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 RNU7-188P-201ENST00000517063 64 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 AC069113.1-201ENST00000517763 267 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 AC131281.1-201ENST00000522984 164 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 MIR4423-201ENST00000580922 80 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 AL391834.2-201ENST00000609982 546 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 MIR6129-201ENST00000616087 109 ntBASIC-1.53□□□□□ -2.65
CUX1P39880 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 Y_RNA.253-201ENST00000364562 112 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 RNU6-468P-201ENST00000384003 109 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC-1.54□□□□□ -2.66
CUX1P39880 AL008987.1-201ENST00000415528 237 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 MTATP6P17-201ENST00000431030 672 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 FCF1P4-201ENST00000448326 183 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 USP9YP12-201ENST00000450481 570 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 snoU83B.1-201ENST00000517136 88 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 AP003072.1-201ENST00000531740 145 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 AC090616.2-202ENST00000584248 222 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 AL136370.1-201ENST00000608166 691 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 AL121757.2-201ENST00000611223 313 ntBASIC-1.54□□□□□ -2.66
CUX1P39880 RNU6-1309P-201ENST00000363305 108 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 RNU4-1-201ENST00000363925 141 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 SNORD14E-201ENST00000364009 85 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 RNU6-702P-201ENST00000364982 107 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 Y_RNA.377-201ENST00000365644 108 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 Y_RNA.517-201ENST00000384551 106 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 RNU6-550P-201ENST00000391057 101 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 AC108059.2-201ENST00000434626 151 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 AC010655.3-201ENST00000478818 450 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 MIR4770-201ENST00000579149 58 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 AC002044.1-201ENST00000606707 158 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 AC131235.4-201ENST00000609288 620 ntBASIC-1.55□□□□□ -2.66
CUX1P39880 RNU6-442P-201ENST00000383968 104 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 SNORD12C-201ENST00000386307 89 ntBASIC-1.56□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms