Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU4-41P-201ENST00000364426 143 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 SNORA72-201ENST00000384339 132 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 CALM2P4-201ENST00000430810 426 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 HSPE1P24-201ENST00000450782 238 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 snoU13.9-201ENST00000458927 103 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 RNU7-141P-201ENST00000459304 62 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 RNU7-115P-201ENST00000516433 55 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 MIR4285-201ENST00000581001 85 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 U6.104-201ENST00000637979 90 ntBASIC1.59□□□□□ -2.15
HOXC9P31274 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.58□□□□□ -2.16
HOXC9P31274 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.58□□□□□ -2.16
HOXC9P31274 RNU6-1323P-201ENST00000384025 107 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 RNU6-763P-201ENST00000390865 106 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 MLLT10P1-201ENST00000418346 262 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 BTF3P11-201ENST00000426582 477 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 MTCYBP9-201ENST00000431021 303 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 OR9P1P-201ENST00000496431 281 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 MTCO2P24-201ENST00000515611 426 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 RNU7-116P-201ENST00000516940 62 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.58□□□□□ -2.16
HOXC9P31274 SNORA77B-201ENST00000578179 125 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 AL162424.1-201ENST00000602325 221 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 AL591926.4-201ENST00000616895 298 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 AC073349.3-201ENST00000617616 186 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 ICE2P2-201ENST00000483823 2787 ntBASIC1.58□□□□□ -2.16
HOXC9P31274 MIR126-201ENST00000362291 85 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 RNU6-472P-201ENST00000384299 107 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 MIR568-201ENST00000385036 95 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 RNA5SP482-201ENST00000391269 118 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 PGBD4P5-201ENST00000445958 426 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 U8.19-201ENST00000459095 133 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.57□□□□□ -2.16
HOXC9P31274 RNU7-28P-201ENST00000516759 62 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 SUMO2P16-201ENST00000519475 264 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 AL358944.1-201ENST00000528537 144 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 AC127455.1-201ENST00000565496 145 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 MIR4778-201ENST00000577635 80 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 AP003357.1-201ENST00000604497 148 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 SNORD3E-202ENST00000627253 216 ntBASIC1.57□□□□□ -2.16
HOXC9P31274 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.57□□□□□ -2.16
HOXC9P31274 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
HOXC9P31274 RNU6-1272P-201ENST00000362776 107 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 Y_RNA.253-201ENST00000364562 112 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 RNA5SP259-201ENST00000365541 109 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 MIR520E-201ENST00000384867 87 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 MIR513A1-201ENST00000385138 129 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 U8.16-201ENST00000391279 133 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 MIR1302-3-201ENST00000408128 138 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 MTND3P2-201ENST00000438452 342 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 Z98949.2-201ENST00000440996 144 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 RNA5SP168-201ENST00000516642 112 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 SNORA27.4-201ENST00000516650 95 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 RNU6-1116P-201ENST00000517269 99 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 AC005357.1-201ENST00000588399 301 ntBASIC1.56□□□□□ -2.16
HOXC9P31274 MIR194-1-201ENST00000384892 85 ntBASIC1.55□□□□□ -2.16
HOXC9P31274 SNORA36B-201ENST00000410438 131 ntBASIC1.55□□□□□ -2.16
HOXC9P31274 AC019176.1-201ENST00000518519 225 ntBASIC1.55□□□□□ -2.16
HOXC9P31274 AC106754.2-201ENST00000623006 233 ntBASIC1.55□□□□□ -2.16
HOXC9P31274 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.55□□□□□ -2.16
HOXC9P31274 RNU6-1123P-201ENST00000362347 106 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 Y_RNA.44-201ENST00000362676 108 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 Y_RNA.117-201ENST00000363294 101 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 RNU6-899P-201ENST00000363947 107 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 RNU6-424P-201ENST00000384367 105 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 MIR1278-201ENST00000408753 81 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 RNU2-38P-201ENST00000410856 79 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 AL161935.2-201ENST00000414627 60 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 PIGPP3-201ENST00000425307 415 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 AC093850.1-201ENST00000454121 251 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 Y_RNA.637-201ENST00000459424 114 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 RNU7-12P-201ENST00000516030 62 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 AC090821.2-201ENST00000523552 176 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 AL513423.1-201ENST00000621695 132 ntBASIC1.54□□□□□ -2.16
HOXC9P31274 Y_RNA.54-201ENST00000362766 105 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 RNU6-1205P-201ENST00000363625 106 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 Y_RNA.203-201ENST00000364106 102 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 Y_RNA.217-201ENST00000364214 105 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 Y_RNA.288-201ENST00000364854 92 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 RNU6-163P-201ENST00000384396 106 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 RNU6-1289P-201ENST00000384431 106 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 MIR660-201ENST00000385235 97 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 RNU6-437P-201ENST00000459408 95 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 Y_RNA.641-201ENST00000459414 105 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXC9P31274 U2.14-201ENST00000615943 113 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 snoU18.1-201ENST00000629629 71 ntBASIC1.53□□□□□ -2.16
HOXC9P31274 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXC9P31274 Y_RNA.275-201ENST00000364726 110 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 RNU6-740P-201ENST00000364734 105 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 Y_RNA.293-201ENST00000364908 93 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 RNU6-574P-201ENST00000384265 107 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 MIR222-201ENST00000384992 110 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 SNRPGP10-201ENST00000432323 225 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.52□□□□□ -2.17
HOXC9P31274 AC012433.1-201ENST00000588916 398 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 AL162730.1-201ENST00000605734 292 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 AL008718.3-201ENST00000610217 321 ntBASIC1.52□□□□□ -2.17
HOXC9P31274 JPX_2.1-201ENST00000614161 69 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 100.8 ms