Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNU6-1209P-201ENST00000363655 107 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 SNORA25.6-201ENST00000364121 118 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 Y_RNA.796-201ENST00000364268 102 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 Y_RNA.226-201ENST00000364337 114 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 Y_RNA.799-201ENST00000364992 102 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 RNA5SP210-201ENST00000391034 120 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 SNORD11-201ENST00000459124 84 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 RNU6-659P-201ENST00000516454 104 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 RNU6-919P-201ENST00000516731 104 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 RNU6-1096P-201ENST00000517089 102 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 AC004486.1-201ENST00000546846 233 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.62□□□□□ -1.99
COL6A1P12109 AP000942.3-201ENST00000603702 160 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 MIR6873-201ENST00000622788 63 ntBASIC2.62□□□□□ -1.99
COL6A1P12109 Z82195.2-201ENST00000612348 18351 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 RNU6-1056P-201ENST00000383996 107 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 SNORA64-201ENST00000384674 134 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 MIR29C-201ENST00000385231 88 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 HMGN2P39-201ENST00000398005 273 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 Y_RNA.621-201ENST00000411065 96 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 CYCSP49-201ENST00000420810 319 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 AC055731.1-201ENST00000474387 401 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 AC018868.1-201ENST00000491307 315 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 OR9P1P-201ENST00000496431 281 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 Y_RNA.692-201ENST00000516627 105 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 MIR5007-201ENST00000583098 95 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 AC097639.2-201ENST00000603159 172 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 AC073413.2-201ENST00000604332 360 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.61□□□□□ -1.99
COL6A1P12109 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.61□□□□□ -1.99
COL6A1P12109 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL6A1P12109 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.61□□□□□ -1.99
COL6A1P12109 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A1P12109 snoU2-30.2-201ENST00000362805 70 ntBASIC2.6□□□□□ -1.99
COL6A1P12109 Y_RNA.634-201ENST00000364811 113 ntBASIC2.6□□□□□ -1.99
COL6A1P12109 MIR562-201ENST00000384894 95 ntBASIC2.6□□□□□ -1.99
COL6A1P12109 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
COL6A1P12109 RNU6-1186P-201ENST00000410429 97 ntBASIC2.6□□□□□ -1.99
COL6A1P12109 AL035461.1-201ENST00000421490 332 ntBASIC2.6□□□□□ -1.99
COL6A1P12109 AC060773.1-201ENST00000421698 310 ntBASIC2.6□□□□□ -1.99
COL6A1P12109 AC011406.1-201ENST00000512440 370 ntBASIC2.6□□□□□ -1.99
COL6A1P12109 MIR6840-201ENST00000611937 71 ntBASIC2.6□□□□□ -1.99
COL6A1P12109 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL6A1P12109 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.59□□□□□ -1.99
COL6A1P12109 Y_RNA.120-201ENST00000363304 110 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 RNY1P11-201ENST00000363759 113 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 RNU1-96P-201ENST00000364163 162 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 RNU6-1325P-201ENST00000364905 105 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 RNU6-1138P-201ENST00000365359 106 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 SNORD18B-201ENST00000365659 72 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 Y_RNA.563-201ENST00000384707 108 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 U8.13-201ENST00000390842 128 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 RNU2-48P-201ENST00000410694 191 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 RNU7-99P-201ENST00000516271 62 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 RNU7-149P-201ENST00000516739 59 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.59□□□□□ -1.99
COL6A1P12109 AC131055.1-201ENST00000584626 316 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 Pinc.1-201ENST00000616452 154 ntBASIC2.59□□□□□ -1.99
COL6A1P12109 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.59□□□□□ -2
COL6A1P12109 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
COL6A1P12109 Y_RNA.91-201ENST00000363042 107 ntBASIC2.58□□□□□ -2
COL6A1P12109 RNU6-1336P-201ENST00000383886 109 ntBASIC2.58□□□□□ -2
COL6A1P12109 MIR144-201ENST00000384886 86 ntBASIC2.58□□□□□ -2
COL6A1P12109 MIR17-201ENST00000385012 84 ntBASIC2.58□□□□□ -2
COL6A1P12109 SNORA26.9-201ENST00000391322 122 ntBASIC2.58□□□□□ -2
COL6A1P12109 AC018634.1-201ENST00000437554 401 ntBASIC2.58□□□□□ -2
COL6A1P12109 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.58□□□□□ -2
COL6A1P12109 RNU6-365P-201ENST00000517113 106 ntBASIC2.58□□□□□ -2
COL6A1P12109 AC067747.1-201ENST00000608026 250 ntBASIC2.58□□□□□ -2
COL6A1P12109 AL359075.3-201ENST00000613288 217 ntBASIC2.58□□□□□ -2
COL6A1P12109 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
COL6A1P12109 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
COL6A1P12109 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL6A1P12109 MIR340-201ENST00000362125 95 ntBASIC2.57□□□□□ -2
COL6A1P12109 SRIP3-201ENST00000413200 219 ntBASIC2.57□□□□□ -2
COL6A1P12109 AL353689.1-201ENST00000438895 199 ntBASIC2.57□□□□□ -2
COL6A1P12109 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.57□□□□□ -2
COL6A1P12109 MIR4498-201ENST00000577599 66 ntBASIC2.57□□□□□ -2
COL6A1P12109 MIR219B-201ENST00000637023 88 ntBASIC2.57□□□□□ -2
COL6A1P12109 AC008555.8-201ENST00000623602 2168 ntBASIC2.57□□□□□ -2
COL6A1P12109 AC018630.2-201ENST00000534866 2403 ntBASIC2.56□□□□□ -2
COL6A1P12109 U8.1-201ENST00000362843 134 ntBASIC2.56□□□□□ -2
COL6A1P12109 Y_RNA.99-201ENST00000363138 105 ntBASIC2.56□□□□□ -2
COL6A1P12109 Y_RNA.242-201ENST00000364473 110 ntBASIC2.56□□□□□ -2
COL6A1P12109 MIR518A2-201ENST00000384966 87 ntBASIC2.56□□□□□ -2
COL6A1P12109 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.56□□□□□ -2
COL6A1P12109 AC233266.1-201ENST00000454518 96 ntBASIC2.56□□□□□ -2
COL6A1P12109 RNU7-107P-201ENST00000459121 61 ntBASIC2.56□□□□□ -2
COL6A1P12109 HMGN1P7-201ENST00000491722 313 ntBASIC2.56□□□□□ -2
COL6A1P12109 SNORA18.4-201ENST00000516440 124 ntBASIC2.56□□□□□ -2
COL6A1P12109 Y_RNA.712-201ENST00000517011 92 ntBASIC2.56□□□□□ -2
COL6A1P12109 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.56□□□□□ -2
COL6A1P12109 AC242852.1-201ENST00000612151 96 ntBASIC2.56□□□□□ -2
COL6A1P12109 AC244015.1-201ENST00000622301 99 ntBASIC2.56□□□□□ -2
COL6A1P12109 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL6A1P12109 RNU6-44P-201ENST00000384045 107 ntBASIC2.55□□□□□ -2
COL6A1P12109 SNORA67.3-201ENST00000384366 140 ntBASIC2.55□□□□□ -2
COL6A1P12109 RNU6-1064P-201ENST00000410626 104 ntBASIC2.55□□□□□ -2
COL6A1P12109 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.55□□□□□ -2
COL6A1P12109 RNU6-1041P-201ENST00000516254 102 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms