Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
USP3Q9Y6I4 MIR1912-201ENST00000410389 80 ntBASIC3.21□□□□□ -1.9
USP3Q9Y6I4 RPL32P35-201ENST00000415214 394 ntBASIC3.21□□□□□ -1.9
USP3Q9Y6I4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.21□□□□□ -1.9
USP3Q9Y6I4 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.21□□□□□ -1.9
USP3Q9Y6I4 AL035425.3-201ENST00000564206 4996 ntBASIC3.21□□□□□ -1.9
USP3Q9Y6I4 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.21□□□□□ -1.9
USP3Q9Y6I4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP3Q9Y6I4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP3Q9Y6I4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
USP3Q9Y6I4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.2□□□□□ -1.9
USP3Q9Y6I4 MIR22-201ENST00000362190 85 ntBASIC3.2□□□□□ -1.9
USP3Q9Y6I4 RNU6-862P-201ENST00000362804 105 ntBASIC3.2□□□□□ -1.9
USP3Q9Y6I4 RNU6-461P-201ENST00000364195 107 ntBASIC3.2□□□□□ -1.9
USP3Q9Y6I4 MIR128-1-201ENST00000384921 82 ntBASIC3.2□□□□□ -1.9
USP3Q9Y6I4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.2□□□□□ -1.9
USP3Q9Y6I4 AL035398.1-201ENST00000430869 322 ntBASIC3.2□□□□□ -1.9
USP3Q9Y6I4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.2□□□□□ -1.9
USP3Q9Y6I4 AC015726.2-201ENST00000620112 122 ntBASIC3.2□□□□□ -1.9
USP3Q9Y6I4 MAPK10-362ENST00000641864 4484 ntBASIC3.2□□□□□ -1.9
USP3Q9Y6I4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.19□□□□□ -1.9
USP3Q9Y6I4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP3Q9Y6I4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
USP3Q9Y6I4 MIR148B-201ENST00000362252 99 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 SNORA71.1-201ENST00000364523 117 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 SNORA46-201ENST00000384762 135 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 MIR23A-201ENST00000385245 73 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 SNORA48.8-201ENST00000391324 134 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 MIR1289-1-201ENST00000408836 144 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 RNU6-938P-201ENST00000411285 103 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.19□□□□□ -1.9
USP3Q9Y6I4 RN7SL20P-201ENST00000488827 297 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 RNU7-123P-201ENST00000515911 60 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 RNU6-904P-201ENST00000516206 101 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 AC026271.5-201ENST00000577873 130 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 AC091932.4-201ENST00000623386 200 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
USP3Q9Y6I4 AL162726.3-218ENST00000636401 95 ntBASIC3.19□□□□□ -1.9
USP3Q9Y6I4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
USP3Q9Y6I4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AL021368.2-201ENST00000606125 5352 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AC092435.3-201ENST00000565538 3654 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 MIR302B-201ENST00000362188 73 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 Y_RNA.93-201ENST00000363066 109 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 RNA5SP493-201ENST00000364115 91 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 MIR590-201ENST00000385008 97 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 RNY4P29-201ENST00000410801 97 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.18□□□□□ -1.9
USP3Q9Y6I4 RPS27P29-201ENST00000463110 252 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 TRBV12-1-201ENST00000479785 344 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AL049873.1-201ENST00000480540 376 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AC091826.1-201ENST00000514065 313 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 IGHVII-40-1-201ENST00000517316 58 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AC245166.1-201ENST00000521012 253 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AC078899.2-201ENST00000595282 212 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AL162274.2-201ENST00000614406 332 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AC027279.3-201ENST00000625055 122 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP3Q9Y6I4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP3Q9Y6I4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP3Q9Y6I4 AC008264.2-201ENST00000610193 3731 ntBASIC3.18□□□□□ -1.9
USP3Q9Y6I4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP3Q9Y6I4 Y_RNA.344-201ENST00000365381 112 ntBASIC3.17□□□□□ -1.9
USP3Q9Y6I4 MIR1262-201ENST00000408276 93 ntBASIC3.17□□□□□ -1.9
USP3Q9Y6I4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC3.17□□□□□ -1.9
USP3Q9Y6I4 MTATP8P2-201ENST00000435212 202 ntBASIC3.17□□□□□ -1.9
USP3Q9Y6I4 AC069257.2-201ENST00000441819 155 ntBASIC3.17□□□□□ -1.9
USP3Q9Y6I4 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.17□□□□□ -1.9
USP3Q9Y6I4 MIR3169-201ENST00000578032 83 ntBASIC3.17□□□□□ -1.9
USP3Q9Y6I4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.17□□□□□ -1.9
USP3Q9Y6I4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
USP3Q9Y6I4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
USP3Q9Y6I4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
USP3Q9Y6I4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP3Q9Y6I4 RNU6-23P-201ENST00000363283 107 ntBASIC3.16□□□□□ -1.9
USP3Q9Y6I4 RNU6-49P-201ENST00000384256 107 ntBASIC3.16□□□□□ -1.9
USP3Q9Y6I4 RNU6-424P-201ENST00000384367 105 ntBASIC3.16□□□□□ -1.9
USP3Q9Y6I4 SNORA44-201ENST00000384584 132 ntBASIC3.16□□□□□ -1.9
USP3Q9Y6I4 AC005786.1-201ENST00000588553 154 ntBASIC3.16□□□□□ -1.9
USP3Q9Y6I4 AC007318.2-201ENST00000620999 243 ntBASIC3.16□□□□□ -1.9
USP3Q9Y6I4 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP3Q9Y6I4 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
USP3Q9Y6I4 AC093831.2-201ENST00000624393 3427 ntBASIC3.16□□□□□ -1.9
USP3Q9Y6I4 AL596211.1-201ENST00000569873 2277 ntBASIC3.16□□□□□ -1.9
USP3Q9Y6I4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
USP3Q9Y6I4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.15□□□□□ -1.9
USP3Q9Y6I4 RNU4-36P-201ENST00000364294 144 ntBASIC3.15□□□□□ -1.91
USP3Q9Y6I4 RNU6-950P-201ENST00000384651 107 ntBASIC3.15□□□□□ -1.91
USP3Q9Y6I4 MIR29C-201ENST00000385231 88 ntBASIC3.15□□□□□ -1.91
USP3Q9Y6I4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.15□□□□□ -1.91
USP3Q9Y6I4 RPL39P25-201ENST00000449384 154 ntBASIC3.15□□□□□ -1.91
USP3Q9Y6I4 RNU7-96P-201ENST00000459535 64 ntBASIC3.15□□□□□ -1.91
USP3Q9Y6I4 RN7SL75P-201ENST00000461926 281 ntBASIC3.15□□□□□ -1.91
USP3Q9Y6I4 AL442128.1-201ENST00000615151 90 ntBASIC3.15□□□□□ -1.91
USP3Q9Y6I4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.15□□□□□ -1.91
USP3Q9Y6I4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
USP3Q9Y6I4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms