Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 RNU7-128P-201ENST00000517247 62 ntBASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 RNU2-19P-201ENST00000517288 84 ntBASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 RNU2-4P-201ENST00000606190 192 ntBASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 MIR6840-201ENST00000611937 71 ntBASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 MIR548AY-201ENST00000617669 107 ntBASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 AC012640.5-201ENST00000623897 319 ntBASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 AC021753.1-201ENST00000635724 168 ntBASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 AC068647.2-201ENST00000637380 353 ntBASIC2.34□□□□□ -2.03
NR2E3Q9Y5X4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
NR2E3Q9Y5X4 SNORA48.1-201ENST00000390879 135 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 RNA5SP323-201ENST00000391094 133 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 MIR1278-201ENST00000408753 81 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 RNA5SP450-201ENST00000411206 102 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 AC090255.1-201ENST00000495779 349 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-453P-201ENST00000516819 85 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 AC127455.1-201ENST00000565496 145 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 AC069114.2-201ENST00000604699 304 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 U1.36-201ENST00000620684 176 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 AC009831.4-201ENST00000620744 325 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 U6.108-201ENST00000637764 58 ntBASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.24-201ENST00000362508 103 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-774P-201ENST00000363238 107 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.121-201ENST00000363309 113 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.170-201ENST00000363746 110 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.293-201ENST00000364908 93 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 RNA5SP37-201ENST00000365420 130 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.506-201ENST00000384494 102 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-125P-201ENST00000384505 107 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 SNORA48.3-201ENST00000391081 134 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 AP1B1P2-201ENST00000416196 106 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 AL445685.2-201ENST00000422551 342 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 AL162725.1-201ENST00000435405 301 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 MTND5P41-201ENST00000517498 206 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 SNORA4-201ENST00000584302 138 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 AC005972.2-201ENST00000604690 348 ntBASIC2.32□□□□□ -2.04
NR2E3Q9Y5X4 AL596028.1-201ENST00000326971 197 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.75-201ENST00000362927 97 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-1205P-201ENST00000363625 106 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 SNORA33-201ENST00000363664 130 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-1019P-201ENST00000364424 107 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RNA5SP190-201ENST00000365222 118 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-969P-201ENST00000383900 105 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 SNORA6-201ENST00000384033 151 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-746P-201ENST00000384112 109 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-804P-201ENST00000384286 107 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 SNORA8-201ENST00000384574 139 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 SNORA8.3-201ENST00000384679 139 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-376P-201ENST00000384731 106 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 SNORA36B-201ENST00000410438 131 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-383P-201ENST00000410864 94 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 HSPE1P21-201ENST00000438283 308 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RPS26P45-201ENST00000471748 340 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 AC055731.1-201ENST00000474387 401 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 RPL23AP63-201ENST00000498752 471 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.802-201ENST00000614892 130 ntBASIC2.31□□□□□ -2.04
NR2E3Q9Y5X4 AC245060.5-201ENST00000610778 3293 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-144P-201ENST00000383951 107 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 RNA5SP501-201ENST00000410990 112 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 MIR5094-201ENST00000578766 85 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 MIR3144-201ENST00000579460 79 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 MIR5688-201ENST00000580619 83 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 POLR3GP1-201ENST00000594073 261 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 AC073413.2-201ENST00000604332 360 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 AP000553.5-201ENST00000641933 54 ntBASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
NR2E3Q9Y5X4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.229-201ENST00000364347 113 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-187P-201ENST00000384139 106 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 MT-TT-201ENST00000387460 66 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 MIR548M-201ENST00000408260 86 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 AC069257.2-201ENST00000441819 155 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 RPS4XP11-201ENST00000446897 772 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 RNU7-94P-201ENST00000459576 63 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 RN7SKP164-201ENST00000516138 266 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 RNVU1-2-201ENST00000516326 135 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 SNORA25.15-201ENST00000516487 89 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 MIR3133-201ENST00000583157 78 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 AC108706.1-201ENST00000611053 297 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 AC104465.1-201ENST00000611365 139 ntBASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
NR2E3Q9Y5X4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 AC018630.2-201ENST00000534866 2403 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-661P-201ENST00000362409 107 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 Y_RNA.182-201ENST00000363880 111 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 RNU4-13P-201ENST00000364019 141 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-275P-201ENST00000364910 107 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 RNU6-136P-201ENST00000384663 107 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 MIR562-201ENST00000384894 95 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 MIR520G-201ENST00000385064 90 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 MIR613-201ENST00000385248 95 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 MIR616-201ENST00000385293 97 ntBASIC2.28□□□□□ -2.04
NR2E3Q9Y5X4 AC091021.1-201ENST00000468051 388 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 218.2 ms