Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU6-969P-201ENST00000383900 105 ntBASIC0.9□□□□□ -2.27
FOXA2Q9Y261 MIR802-201ENST00000390235 94 ntBASIC0.9□□□□□ -2.27
FOXA2Q9Y261 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.9□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.638-201ENST00000459374 113 ntBASIC0.9□□□□□ -2.27
FOXA2Q9Y261 AC093852.1-201ENST00000503587 266 ntBASIC0.9□□□□□ -2.27
FOXA2Q9Y261 RNU6-1053P-201ENST00000515930 101 ntBASIC0.9□□□□□ -2.27
FOXA2Q9Y261 AC024405.2-202ENST00000532731 184 ntBASIC0.9□□□□□ -2.27
FOXA2Q9Y261 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.9□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.804-201ENST00000615262 101 ntBASIC0.9□□□□□ -2.27
FOXA2Q9Y261 AC007742.2-201ENST00000618226 398 ntBASIC0.9□□□□□ -2.27
FOXA2Q9Y261 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.5-201ENST00000362334 102 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.203-201ENST00000364106 102 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 RNU4-50P-201ENST00000364361 141 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 RNU6-937P-201ENST00000384325 106 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 RNU4-30P-201ENST00000410245 143 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 POLR2J4-204ENST00000418424 324 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 AC117454.1-201ENST00000491120 168 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 TRMT112P2-201ENST00000512910 132 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 RNU7-43P-201ENST00000516554 64 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.89□□□□□ -2.27
FOXA2Q9Y261 MIR4764-201ENST00000580680 88 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 MIR3145-201ENST00000580727 82 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 SNORD58B-201ENST00000607313 66 ntBASIC0.89□□□□□ -2.27
FOXA2Q9Y261 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
FOXA2Q9Y261 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXA2Q9Y261 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.80-201ENST00000362996 102 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 SNORD81.1-201ENST00000363064 77 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.143-201ENST00000363520 106 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 RNU6-392P-201ENST00000364926 101 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.471-201ENST00000384312 102 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.485-201ENST00000384395 102 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.551-201ENST00000384661 102 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 AF228730.4-201ENST00000421457 183 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 snoU13.25-201ENST00000458945 104 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 MTND3P22-201ENST00000510932 243 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXA2Q9Y261 MIR4295-201ENST00000585286 85 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 AP003357.1-201ENST00000604497 148 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.88□□□□□ -2.27
FOXA2Q9Y261 MIR548AY-201ENST00000617669 107 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 AC091895.1-201ENST00000624494 256 ntBASIC0.88□□□□□ -2.27
FOXA2Q9Y261 SNORA25.3-201ENST00000363205 127 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 RNY1P10-201ENST00000363268 113 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 RNA5SP48-201ENST00000363969 126 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 SNORD63-201ENST00000384262 68 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 SNORD38C-201ENST00000384381 69 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.579-201ENST00000390939 94 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 RNU6-321P-201ENST00000410912 106 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 POLR2KP2-201ENST00000438155 177 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 SNORD123-201ENST00000459473 70 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 AC087343.1-201ENST00000477341 475 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 AC005840.1-201ENST00000498412 377 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 RNU7-41P-201ENST00000515917 61 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 RNU7-115P-201ENST00000516433 55 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 MIR4795-201ENST00000584182 89 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 MIR4781-201ENST00000585250 76 ntBASIC0.87□□□□□ -2.27
FOXA2Q9Y261 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
FOXA2Q9Y261 MIR337-201ENST00000362281 93 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.197-201ENST00000364004 102 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.315-201ENST00000365117 102 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 SNORA22-201ENST00000383907 134 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 RNY3P14-201ENST00000384309 102 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 RNY1P14-201ENST00000384426 108 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 SNORA22C-201ENST00000384614 134 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 MT-TD-201ENST00000387419 68 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 HMGN1P10-201ENST00000474557 553 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 ACA64.5-201ENST00000516207 127 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 AC040926.1-201ENST00000530195 238 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 AC127455.1-201ENST00000565496 145 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA2Q9Y261 AC087685.1-201ENST00000587507 141 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.86□□□□□ -2.27
FOXA2Q9Y261 AL080274.1-201ENST00000605565 220 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 AL020996.3-201ENST00000606617 222 ntBASIC0.86□□□□□ -2.27
FOXA2Q9Y261 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.86□□□□□ -2.27
FOXA2Q9Y261 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.85□□□□□ -2.27
FOXA2Q9Y261 RNU4-73P-201ENST00000363164 141 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 U8.7-201ENST00000364940 136 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 RNU1-36P-201ENST00000365130 165 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 RNU6-442P-201ENST00000383968 104 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.424-201ENST00000384063 103 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 RNU6-1248P-201ENST00000391096 64 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 RPS3AP1-201ENST00000413190 320 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 FABP5P4-201ENST00000437203 171 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 SEPT14P8-201ENST00000508026 178 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 MIR2681-201ENST00000581814 105 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 SEPT14P17-201ENST00000617978 177 ntBASIC0.85□□□□□ -2.27
FOXA2Q9Y261 Y_RNA.383-201ENST00000383855 97 ntBASIC0.84□□□□□ -2.27
FOXA2Q9Y261 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.84□□□□□ -2.27
FOXA2Q9Y261 RNU6-1170P-201ENST00000515974 106 ntBASIC0.84□□□□□ -2.27
FOXA2Q9Y261 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.84□□□□□ -2.27
FOXA2Q9Y261 AC211469.2-201ENST00000605461 205 ntBASIC0.84□□□□□ -2.27
FOXA2Q9Y261 AC103810.9-201ENST00000606688 112 ntBASIC0.84□□□□□ -2.27
FOXA2Q9Y261 SNORD113-5-201ENST00000607261 78 ntBASIC0.84□□□□□ -2.27
FOXA2Q9Y261 RNU6-1209P-201ENST00000363655 107 ntBASIC0.83□□□□□ -2.28
FOXA2Q9Y261 RNU6-53P-201ENST00000365367 106 ntBASIC0.83□□□□□ -2.28
FOXA2Q9Y261 RNU2-64P-201ENST00000411315 191 ntBASIC0.83□□□□□ -2.28
FOXA2Q9Y261 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms