Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PART1_1.1-201ENST00000611761 217 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.26□□□□□ -2.21
VPS28Q9UK41 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
VPS28Q9UK41 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
VPS28Q9UK41 Y_RNA.4-201ENST00000362333 112 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 Y_RNA.164-201ENST00000363709 102 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 RNU6-392P-201ENST00000364926 101 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 SNORA63.7-201ENST00000365579 123 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 MIR15B-201ENST00000385045 98 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 RNU6-130P-201ENST00000411112 103 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 SNORD116-28-201ENST00000516123 91 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 RN7SKP179-201ENST00000516126 217 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 MIR3145-201ENST00000580727 82 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 AC091895.1-201ENST00000624494 256 ntBASIC1.25□□□□□ -2.21
VPS28Q9UK41 RNU1-124P-201ENST00000363861 145 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 AC117470.1-201ENST00000381974 330 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 Y_RNA.383-201ENST00000383855 97 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 MIR136-201ENST00000385207 82 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 RNU6-308P-201ENST00000390957 107 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 SNORD12-201ENST00000391002 90 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 RNU6-1248P-201ENST00000391096 64 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 RPL23AP54-201ENST00000495129 419 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 AC024405.2-202ENST00000532731 184 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 AC127455.1-201ENST00000565496 145 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 AC124312.5-201ENST00000604451 268 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 MIR548AY-201ENST00000617669 107 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 AL160413.1-201ENST00000622780 310 ntBASIC1.24□□□□□ -2.21
VPS28Q9UK41 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.23□□□□□ -2.21
VPS28Q9UK41 Y_RNA.460-201ENST00000384255 102 ntBASIC1.23□□□□□ -2.21
VPS28Q9UK41 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.23□□□□□ -2.21
VPS28Q9UK41 RNU7-115P-201ENST00000516433 55 ntBASIC1.23□□□□□ -2.21
VPS28Q9UK41 C8orf59P2-201ENST00000603441 271 ntBASIC1.23□□□□□ -2.21
VPS28Q9UK41 AL096861.1-201ENST00000610899 123 ntBASIC1.23□□□□□ -2.21
VPS28Q9UK41 JPX_2.1-201ENST00000614161 69 ntBASIC1.23□□□□□ -2.21
VPS28Q9UK41 AC007742.2-201ENST00000618226 398 ntBASIC1.23□□□□□ -2.21
VPS28Q9UK41 AC090574.1-201ENST00000623186 233 ntBASIC1.23□□□□□ -2.21
VPS28Q9UK41 Y_RNA.31-201ENST00000362574 102 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 Y_RNA.203-201ENST00000364106 102 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 Y_RNA.813-201ENST00000364639 102 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 RNU5E-4P-201ENST00000364931 120 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 MIR516B2-201ENST00000385190 85 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 RPS23P4-201ENST00000487908 423 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 AC117454.1-201ENST00000491120 168 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 Y_RNA.715-201ENST00000517082 110 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 AC090821.2-201ENST00000523552 176 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 AC136932.1-201ENST00000574771 208 ntBASIC1.22□□□□□ -2.21
VPS28Q9UK41 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
VPS28Q9UK41 RNU6-867P-201ENST00000364956 107 ntBASIC1.21□□□□□ -2.22
VPS28Q9UK41 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.21□□□□□ -2.22
VPS28Q9UK41 PMCHL1-202ENST00000423102 261 ntBASIC1.21□□□□□ -2.22
VPS28Q9UK41 SNORD79.1-201ENST00000516069 84 ntBASIC1.21□□□□□ -2.22
VPS28Q9UK41 RNU6-1046P-201ENST00000516538 107 ntBASIC1.21□□□□□ -2.22
VPS28Q9UK41 AC090142.3-201ENST00000519012 385 ntBASIC1.21□□□□□ -2.22
VPS28Q9UK41 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.21□□□□□ -2.22
VPS28Q9UK41 AC087685.1-201ENST00000587507 141 ntBASIC1.21□□□□□ -2.22
VPS28Q9UK41 MIR376A1-201ENST00000616574 68 ntBASIC1.21□□□□□ -2.22
VPS28Q9UK41 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.2□□□□□ -2.22
VPS28Q9UK41 RNU4-80P-201ENST00000363200 141 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 Y_RNA.148-201ENST00000363557 117 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 SNORD14E-201ENST00000364009 85 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 Y_RNA.286-201ENST00000364813 102 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 U8.7-201ENST00000364940 136 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 SNORD50B-201ENST00000364995 70 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 RNU6-53P-201ENST00000365367 106 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 SNORA80D-201ENST00000384488 135 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 MIR19B1-201ENST00000384829 87 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 AC063976.4-201ENST00000421971 163 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 AC245047.8-201ENST00000456455 284 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 AC010655.3-201ENST00000478818 450 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 SNORA74.3-201ENST00000517108 154 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 Y_RNA.721-201ENST00000517207 102 ntBASIC1.2□□□□□ -2.22
VPS28Q9UK41 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
VPS28Q9UK41 Y_RNA.28-201ENST00000362554 111 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 SNORD113-8-201ENST00000363497 74 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 Y_RNA.183-201ENST00000363882 113 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 Y_RNA.645-201ENST00000391229 102 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 RNU6-101P-201ENST00000410323 104 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 Y_RNA.631-201ENST00000459607 101 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 RNU6-397P-201ENST00000516226 104 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 Y_RNA.676-201ENST00000516393 96 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 RNU6-988P-201ENST00000519081 107 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 AC136628.3-201ENST00000521868 290 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 MIR4300-201ENST00000581016 96 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 AL391903.3-201ENST00000612158 163 ntBASIC1.19□□□□□ -2.22
VPS28Q9UK41 Y_RNA.222-201ENST00000364264 102 ntBASIC1.18□□□□□ -2.22
VPS28Q9UK41 Y_RNA.363-201ENST00000365529 113 ntBASIC1.18□□□□□ -2.22
VPS28Q9UK41 RNU6-969P-201ENST00000383900 105 ntBASIC1.18□□□□□ -2.22
VPS28Q9UK41 RNU6-823P-201ENST00000391042 103 ntBASIC1.18□□□□□ -2.22
VPS28Q9UK41 OR2A41P-201ENST00000473586 105 ntBASIC1.18□□□□□ -2.22
VPS28Q9UK41 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.18□□□□□ -2.22
VPS28Q9UK41 MIR2681-201ENST00000581814 105 ntBASIC1.18□□□□□ -2.22
VPS28Q9UK41 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
VPS28Q9UK41 Y_RNA.389-201ENST00000383924 113 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 SNORA72.4-201ENST00000384174 132 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 MIR802-201ENST00000390235 94 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 MIR1252-201ENST00000408861 65 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 AL591704.2-201ENST00000421658 181 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 RNU7-141P-201ENST00000459304 62 ntBASIC1.17□□□□□ -2.22
VPS28Q9UK41 RNU6-437P-201ENST00000459408 95 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms