Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.97□□□□□ -2.25
LHX3Q9UBR4 uc_338.22-201ENST00000622722 187 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 RNU6-1084P-201ENST00000362498 107 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.116-201ENST00000363292 103 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.191-201ENST00000363972 113 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.336-201ENST00000365307 109 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 SNORA72-201ENST00000384339 132 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 MIR19B1-201ENST00000384829 87 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 MIR522-201ENST00000385071 87 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 MIR516B2-201ENST00000385190 85 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 MIR1298-201ENST00000408783 112 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 AL390729.2-201ENST00000416137 156 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 U8.20-201ENST00000459445 131 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 AC010655.3-201ENST00000478818 450 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 RNU6-1170P-201ENST00000515974 106 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 SNORD79.1-201ENST00000516069 84 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.96□□□□□ -2.26
LHX3Q9UBR4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
LHX3Q9UBR4 LARP7P1-201ENST00000605576 316 ntBASIC0.96□□□□□ -2.26
LHX3Q9UBR4 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.96□□□□□ -2.26
LHX3Q9UBR4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.813-201ENST00000364639 102 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.310-201ENST00000365063 113 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 SNORD14.1-201ENST00000365609 90 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 SNORA80D-201ENST00000384488 135 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.551-201ENST00000384661 102 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 RNU6-21P-201ENST00000384710 107 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 RNU6-130P-201ENST00000411112 103 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 AC063976.4-201ENST00000421971 163 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 MTND4LP11-201ENST00000422184 280 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 SNORD111.1-201ENST00000516421 86 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 POLR3GP1-201ENST00000594073 261 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 HSPE1P19-201ENST00000603327 295 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 AL078603.1-201ENST00000603824 313 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 AL096861.1-201ENST00000610899 123 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 PART1_1.1-201ENST00000611761 217 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.95□□□□□ -2.26
LHX3Q9UBR4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
LHX3Q9UBR4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.112-201ENST00000363250 102 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 RNU4-50P-201ENST00000364361 141 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.363-201ENST00000365529 113 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.508-201ENST00000384502 114 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.526-201ENST00000384572 110 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 MIR532-201ENST00000385025 91 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 AC002429.1-201ENST00000437672 148 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 AC117454.1-201ENST00000491120 168 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 SNORD45.4-201ENST00000516629 73 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 AP001094.1-201ENST00000579805 193 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
LHX3Q9UBR4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.94□□□□□ -2.26
LHX3Q9UBR4 MIR373-201ENST00000362273 69 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.31-201ENST00000362574 102 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.368-201ENST00000365547 113 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 SNORD63-201ENST00000384262 68 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 RNU6-131P-201ENST00000391144 107 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 AC024067.1-201ENST00000426199 223 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 SNRPGP10-201ENST00000432323 225 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 RNA5SP220-201ENST00000516298 104 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 RNU6-113P-201ENST00000516653 101 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.714-201ENST00000517065 90 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 AC024405.2-202ENST00000532731 184 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 MIR4452-201ENST00000583004 71 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 MIR3192-201ENST00000584920 77 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 AC136443.5-201ENST00000603741 370 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.93□□□□□ -2.26
LHX3Q9UBR4 AC012676.2-201ENST00000619258 186 ntBASIC0.93□□□□□ -2.26
LHX3Q9UBR4 AL391516.1-201ENST00000554380 2449 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.286-201ENST00000364813 102 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 U8.7-201ENST00000364940 136 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 SNORD50B-201ENST00000364995 70 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 SNORD114-22-201ENST00000365423 72 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 RNU6-1323P-201ENST00000384025 107 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.424-201ENST00000384063 103 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.456-201ENST00000384232 111 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 MIR136-201ENST00000385207 82 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 MIR1302-11-201ENST00000408051 138 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 MIR1302-9-201ENST00000408365 138 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 MIR1302-10-201ENST00000408734 138 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 AC022028.1-201ENST00000412054 408 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.92□□□□□ -2.26
LHX3Q9UBR4 MTND4P19-201ENST00000446659 478 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 snoU13.18-201ENST00000459483 104 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 RPL23AP54-201ENST00000495129 419 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 UBL5P1-201ENST00000507979 193 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 RNU6-397P-201ENST00000516226 104 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 RNU6-1046P-201ENST00000516538 107 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.713-201ENST00000517013 96 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
LHX3Q9UBR4 MIR3973-201ENST00000579824 107 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 MIR1302-2-201ENST00000607096 138 ntBASIC0.92□□□□□ -2.26
LHX3Q9UBR4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.118-201ENST00000363300 101 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.796-201ENST00000364268 102 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.799-201ENST00000364992 102 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 snoU2-30.1-201ENST00000365012 70 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 SNORD42.2-201ENST00000365570 69 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 AC117470.1-201ENST00000381974 330 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 Y_RNA.383-201ENST00000383855 97 ntBASIC0.91□□□□□ -2.26
LHX3Q9UBR4 SNORA22-201ENST00000383907 134 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms