Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 AC091895.1-201ENST00000624494 256 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 snoU2_19.2-201ENST00000363024 80 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 RNU6-833P-201ENST00000363486 107 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.224-201ENST00000364308 111 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 AL590004.1-201ENST00000405321 300 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 AL135790.2-201ENST00000437701 267 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 AC104332.1-201ENST00000440471 797 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 AC233266.1-201ENST00000454518 96 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 RPL39P38-201ENST00000467018 153 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 MIR6078-201ENST00000611069 100 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 AC242852.1-201ENST00000612151 96 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 AC244015.1-201ENST00000622301 99 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 SNORD3E-202ENST00000627253 216 ntBASIC1.34□□□□□ -2.19
CCDC3Q9BQI4 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
CCDC3Q9BQI4 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.118-201ENST00000363300 101 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 RNU6-674P-201ENST00000363831 107 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 RNU6-102P-201ENST00000384485 104 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 RNU6-1065P-201ENST00000384513 106 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 RNU6-1109P-201ENST00000391187 107 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 U8.16-201ENST00000391279 133 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 CALM2P4-201ENST00000430810 426 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 RNU1-123P-201ENST00000458950 160 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 MRPS35P2-201ENST00000508242 191 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 RNU2-31P-201ENST00000516954 155 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 AC127455.1-201ENST00000565496 145 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 POLR3GP1-201ENST00000594073 261 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 AL513534.2-201ENST00000603836 250 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 MIR6504-201ENST00000613520 61 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 MIR8063-201ENST00000621930 81 ntBASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
CCDC3Q9BQI4 RNU4-80P-201ENST00000363200 141 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.116-201ENST00000363292 103 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.145-201ENST00000363527 102 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 RNU6-801P-201ENST00000364087 105 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 RNU6-53P-201ENST00000365367 106 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.355-201ENST00000365462 98 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 RNU6-969P-201ENST00000383900 105 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 SNORA72.4-201ENST00000384174 132 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.602-201ENST00000410535 92 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 SNX2P2-201ENST00000424553 323 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 CYCTP-201ENST00000504253 315 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 RNY3P15-201ENST00000516297 97 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 AP003733.2-201ENST00000529409 171 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 MIR3145-201ENST00000580727 82 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 MIR548AY-201ENST00000617669 107 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 AC022140.2-201ENST00000623500 188 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 AC068647.2-201ENST00000637380 353 ntBASIC1.32□□□□□ -2.2
CCDC3Q9BQI4 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 RNU6-199P-201ENST00000362954 107 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.253-201ENST00000364562 112 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 SNORA63C-201ENST00000364578 129 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 U8.7-201ENST00000364940 136 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 RNU6-1080P-201ENST00000383982 107 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 MIR522-201ENST00000385071 87 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 MIR518E-201ENST00000385252 88 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 SNORA53-201ENST00000391141 249 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 MTCO1P5-201ENST00000433573 344 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 RNA5SP102-201ENST00000516865 106 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.720-201ENST00000517166 92 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 SUMO2P16-201ENST00000519475 264 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 AC024405.2-202ENST00000532731 184 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 AC087685.1-201ENST00000587507 141 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 AL591926.4-201ENST00000616895 298 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 AL442644.1-201ENST00000454390 3105 ntBASIC1.31□□□□□ -2.2
CCDC3Q9BQI4 AL161722.3-201ENST00000605789 2983 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.84-201ENST00000363011 104 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 SNORA2.2-201ENST00000365473 135 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 RNA5SP259-201ENST00000365541 109 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 RNU6-144P-201ENST00000383951 107 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 RNU6-738P-201ENST00000384531 106 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.518-201ENST00000384552 113 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.541-201ENST00000384640 113 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 RPS27P16-201ENST00000425758 201 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 RPL30P7-201ENST00000479312 323 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 AC098869.1-201ENST00000481627 292 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.714-201ENST00000517065 90 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 AC090049.2-201ENST00000550377 109 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 MIR2681-201ENST00000581814 105 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 AP001485.1-201ENST00000604799 199 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 AC037487.3-201ENST00000606668 112 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 AC007742.2-201ENST00000618226 398 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 AL121890.5-201ENST00000620848 304 ntBASIC1.3□□□□□ -2.2
CCDC3Q9BQI4 UBE2WP1-201ENST00000362030 340 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.64-201ENST00000362845 102 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.122-201ENST00000363331 96 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 RNU6-899P-201ENST00000363947 107 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.203-201ENST00000364106 102 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 RNU6-806P-201ENST00000365147 105 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 MIR606-201ENST00000384851 96 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 1241.6 ms