Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 SNORD50B-201ENST00000364995 70 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.428-201ENST00000384078 102 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.462-201ENST00000384268 102 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 RPS3AP1-201ENST00000413190 320 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 AC096644.2-201ENST00000429278 159 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 CYP3A137P-201ENST00000562436 69 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 AC006600.1-201ENST00000572529 153 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 MIR4764-201ENST00000580680 88 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 SEPT14P17-201ENST00000617978 177 ntBASIC0.83□□□□□ -2.28
ZNF560Q96MR9 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.83□□□□□ -2.28
ZNF560Q96MR9 MIR103A2-201ENST00000362154 78 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.456-201ENST00000384232 111 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.463-201ENST00000384271 102 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 MIR548J-201ENST00000408833 112 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 RNU6-855P-201ENST00000410395 104 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 SNRPGP10-201ENST00000432323 225 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.82□□□□□ -2.28
ZNF560Q96MR9 RNU7-41P-201ENST00000515917 61 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 SNORA18.7-201ENST00000516910 131 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 SNORD116.3-201ENST00000517176 78 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 MIR4653-201ENST00000585107 83 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 UBE2V2P2-201ENST00000587677 504 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 MIR4272-201ENST00000635924 64 ntBASIC0.82□□□□□ -2.28
ZNF560Q96MR9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
ZNF560Q96MR9 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
ZNF560Q96MR9 RNA5SP48-201ENST00000363969 126 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.310-201ENST00000365063 113 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.341-201ENST00000365341 102 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.368-201ENST00000365547 113 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 MIR1185-1-201ENST00000408598 86 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 RNU7-152P-201ENST00000458982 64 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 RNA5SP220-201ENST00000516298 104 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 AC136628.3-201ENST00000521868 290 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 AC007742.2-201ENST00000618226 398 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 AC091925.1-201ENST00000623204 462 ntBASIC0.81□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.187-201ENST00000363918 113 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 RNY1P14-201ENST00000384426 108 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 AC024067.1-201ENST00000426199 223 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 SNORD123-201ENST00000459473 70 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 AC091951.2-201ENST00000500762 203 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 PSMC1P5-201ENST00000512850 177 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.673-201ENST00000516306 88 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 RNU11-2P-201ENST00000516898 142 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 POLR3GP1-201ENST00000594073 261 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.772-201ENST00000606692 102 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 AL132765.2-201ENST00000610812 351 ntBASIC0.8□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.330-201ENST00000365230 109 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.390-201ENST00000383932 102 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 AC006461.1-201ENST00000412637 326 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 MTCO2P27-201ENST00000420740 428 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 RNU6-1223P-201ENST00000517124 104 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 AC131055.1-201ENST00000584626 316 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 AC087685.1-201ENST00000587507 141 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 AP003357.1-201ENST00000604497 148 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 AC084781.2-201ENST00000615568 161 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 AL138825.1-201ENST00000618587 192 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 MIR1302-1-201ENST00000637932 143 ntBASIC0.79□□□□□ -2.28
ZNF560Q96MR9 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.78□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.70-201ENST00000362886 110 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 Y_RNA.331-201ENST00000365267 102 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
ZNF560Q96MR9 AL606490.4-201ENST00000423117 127 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 FGF7P4-201ENST00000509595 295 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 RN7SKP164-201ENST00000516138 266 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 SNORA4-201ENST00000584302 138 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 AL121655.1-201ENST00000605811 308 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 MIR6835-201ENST00000621552 64 ntBASIC0.78□□□□□ -2.28
ZNF560Q96MR9 SNORD81.1-201ENST00000363064 77 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 SNORA25.3-201ENST00000363205 127 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 Y_RNA.122-201ENST00000363331 96 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 SNORD14E-201ENST00000364009 85 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 Y_RNA.203-201ENST00000364106 102 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 U7.7-201ENST00000459276 60 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 AC109810.1-201ENST00000534066 224 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 AC005730.3-201ENST00000583067 366 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 MIR6734-201ENST00000621166 68 ntBASIC0.77□□□□□ -2.29
ZNF560Q96MR9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.77□□□□□ -2.29
ZNF560Q96MR9 Y_RNA.269-201ENST00000364685 89 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 RNU6-1283P-201ENST00000365314 105 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 RNU1-115P-201ENST00000365329 160 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 Y_RNA.458-201ENST00000384240 102 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 SNORD63-201ENST00000384262 68 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 MIR100-201ENST00000385259 80 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 SNORA40.14-201ENST00000516543 86 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 AC024405.2-202ENST00000532731 184 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 AC133485.1-201ENST00000567176 124 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 AC138907.6-201ENST00000568401 126 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 RPS29P30-201ENST00000600975 111 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 AL353765.1-201ENST00000605514 183 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 AC011373.1-201ENST00000607270 237 ntBASIC0.76□□□□□ -2.29
ZNF560Q96MR9 RNU6-1115P-201ENST00000362490 106 ntBASIC0.75□□□□□ -2.29
ZNF560Q96MR9 Y_RNA.39-201ENST00000362620 98 ntBASIC0.75□□□□□ -2.29
ZNF560Q96MR9 RNU6-42P-201ENST00000384165 107 ntBASIC0.75□□□□□ -2.29
ZNF560Q96MR9 SNORD38C-201ENST00000384381 69 ntBASIC0.75□□□□□ -2.29
ZNF560Q96MR9 MIR508-201ENST00000384857 115 ntBASIC0.75□□□□□ -2.29
ZNF560Q96MR9 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms