Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 MIR522-201ENST00000385071 87 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 MIR516B2-201ENST00000385190 85 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 MIR891A-201ENST00000401237 79 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 AL451046.2-201ENST00000403074 277 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 MIR1298-201ENST00000408783 112 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 PMCHL1-202ENST00000423102 261 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 RPL39P28-201ENST00000465655 155 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 COX6CP14-201ENST00000469580 174 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 AC117454.1-201ENST00000491120 168 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 RNU6-397P-201ENST00000516226 104 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 C8orf59P2-201ENST00000603441 271 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 AC211469.2-201ENST00000605461 205 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 AL121655.1-201ENST00000605811 308 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 AC011373.1-201ENST00000607270 237 ntBASIC0.96□□□□□ -2.26
VPS39Q96JC1 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
VPS39Q96JC1 Y_RNA.4-201ENST00000362333 112 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 Y_RNA.112-201ENST00000363250 102 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 U8.7-201ENST00000364940 136 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 SNORD50B-201ENST00000364995 70 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 Y_RNA.341-201ENST00000365341 102 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 Y_RNA.439-201ENST00000384119 94 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 Y_RNA.551-201ENST00000384661 102 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 MT-TD-201ENST00000387419 68 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 MIR1278-201ENST00000408753 81 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 RNU2-14P-201ENST00000411053 191 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 AC002429.1-201ENST00000437672 148 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 HMGN1P7-201ENST00000491722 313 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 SNORD79.1-201ENST00000516069 84 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 MIR3192-201ENST00000584920 77 ntBASIC0.95□□□□□ -2.26
VPS39Q96JC1 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.95□□□□□ -2.26
VPS39Q96JC1 SNORD14.1-201ENST00000365609 90 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 Y_RNA.395-201ENST00000383945 109 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 U8.20-201ENST00000459445 131 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 RPS26P48-201ENST00000491713 339 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 CYCTP-201ENST00000504253 315 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 RNU6-322P-201ENST00000516010 103 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 ACA64.5-201ENST00000516207 127 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 POLR3GP1-201ENST00000594073 261 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 AC104695.3-201ENST00000604052 296 ntBASIC0.94□□□□□ -2.26
VPS39Q96JC1 Y_RNA.148-201ENST00000363557 117 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 Y_RNA.462-201ENST00000384268 102 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 SNORA72-201ENST00000384339 132 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 RNU6-102P-201ENST00000384485 104 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 MIR200A-201ENST00000384875 90 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 MIR1302-11-201ENST00000408051 138 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 MIR1302-9-201ENST00000408365 138 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 MIR1302-10-201ENST00000408734 138 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 SNORD124-201ENST00000459577 104 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.93□□□□□ -2.26
VPS39Q96JC1 RNU6-1170P-201ENST00000515974 106 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 SNORD45.4-201ENST00000516629 73 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
VPS39Q96JC1 AC024405.2-202ENST00000532731 184 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.93□□□□□ -2.26
VPS39Q96JC1 AP001094.1-201ENST00000579805 193 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 MIR4762-201ENST00000585261 75 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 MIR1302-2-201ENST00000607096 138 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.93□□□□□ -2.26
VPS39Q96JC1 AC134026.1-201ENST00000623249 2239 ntBASIC0.93□□□□□ -2.26
VPS39Q96JC1 RNU6-1084P-201ENST00000362498 107 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 Y_RNA.105-201ENST00000363182 111 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 RNU4-80P-201ENST00000363200 141 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 Y_RNA.138-201ENST00000363462 102 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 Y_RNA.164-201ENST00000363709 102 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 Y_RNA.216-201ENST00000364205 93 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 U8.5-201ENST00000364528 136 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 RNU6-867P-201ENST00000364956 107 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 Y_RNA.336-201ENST00000365307 109 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 Y_RNA.383-201ENST00000383855 97 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 Y_RNA.445-201ENST00000384168 102 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 SNORA80D-201ENST00000384488 135 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 RNU6-1105P-201ENST00000384774 107 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 Y_RNA.639-201ENST00000458981 102 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 HMGN1P10-201ENST00000474557 553 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 PDCD5P2-201ENST00000507570 312 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 AC090142.3-201ENST00000519012 385 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 AL357312.1-201ENST00000603879 298 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 AC027279.3-201ENST00000625055 122 ntBASIC0.92□□□□□ -2.26
VPS39Q96JC1 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.91□□□□□ -2.26
VPS39Q96JC1 RNU6-801P-201ENST00000364087 105 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 RNU5E-4P-201ENST00000364931 120 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 Y_RNA.368-201ENST00000365547 113 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 RNU6-1323P-201ENST00000384025 107 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 SNORD63-201ENST00000384262 68 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 RNU6-21P-201ENST00000384710 107 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 RNU2-64P-201ENST00000411315 191 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 RPL39P39-201ENST00000455840 151 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 Y_RNA.676-201ENST00000516393 96 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 AC124312.5-201ENST00000604451 268 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 RAC1P9-201ENST00000604990 392 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.91□□□□□ -2.26
VPS39Q96JC1 AC090971.5-201ENST00000621102 293 ntBASIC0.91□□□□□ -2.26
VPS39Q96JC1 Y_RNA.424-201ENST00000384063 103 ntBASIC0.9□□□□□ -2.27
VPS39Q96JC1 SNORA26.5-201ENST00000391215 123 ntBASIC0.9□□□□□ -2.27
VPS39Q96JC1 Y_RNA.602-201ENST00000410535 92 ntBASIC0.9□□□□□ -2.27
VPS39Q96JC1 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.9□□□□□ -2.27
VPS39Q96JC1 AC098869.1-201ENST00000481627 292 ntBASIC0.9□□□□□ -2.27
VPS39Q96JC1 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.9□□□□□ -2.27
VPS39Q96JC1 RNU7-115P-201ENST00000516433 55 ntBASIC0.9□□□□□ -2.27
VPS39Q96JC1 SNORA18.7-201ENST00000516910 131 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms