Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SNORA25.14-201ENST00000516481 132 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 AC022616.6-201ENST00000520479 119 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 AC140658.3-201ENST00000567603 271 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 RNU6-85P-201ENST00000605989 107 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 AC005828.6-201ENST00000606610 232 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 MIR7844-201ENST00000616161 122 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 AC022960.3-201ENST00000619794 441 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 NAA50-211ENST00000630058 177 ntTSL 5 BASIC-0.83□□□□□ -2.54
USF3Q68DE3 U6.114-201ENST00000636407 96 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 RPL22P17-201ENST00000438729 315 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-0.84□□□□□ -2.54
USF3Q68DE3 AC116353.3-201ENST00000511215 249 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 Y_RNA.666-201ENST00000516187 112 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 AC022616.4-201ENST00000522985 181 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-0.84□□□□□ -2.54
USF3Q68DE3 MTCO3P23-201ENST00000561363 289 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 PIGPP4-201ENST00000584447 307 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 RNY4P6-201ENST00000363667 96 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 RNU6-740P-201ENST00000364734 105 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 SNORA20.2-201ENST00000383922 131 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 SNORD56B-201ENST00000384713 71 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 MIR487A-201ENST00000385009 80 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 SNORD70.1-201ENST00000391007 85 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 RNU6-550P-201ENST00000391057 101 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.84□□□□□ -2.54
USF3Q68DE3 AL157687.1-201ENST00000554853 619 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 AC011458.1-201ENST00000604034 617 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.84□□□□□ -2.54
USF3Q68DE3 AL158209.2-201ENST00000619266 216 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 AL596211.1-201ENST00000569873 2277 ntBASIC-0.84□□□□□ -2.54
USF3Q68DE3 SNORD115-7-201ENST00000365306 82 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 MTCO3P40-201ENST00000392516 676 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 SNORD110-201ENST00000408189 75 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 SSR1P2-201ENST00000415208 787 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 AC131281.1-201ENST00000522984 164 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 AP003181.2-201ENST00000528941 181 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 MIR3115-201ENST00000577915 68 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 MIR4752-201ENST00000579672 72 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 RNU6-490P-201ENST00000362985 107 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 Y_RNA.181-201ENST00000363872 101 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 RNU6-455P-201ENST00000384681 107 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 Y_RNA.578-201ENST00000390903 88 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-0.85□□□□□ -2.55
USF3Q68DE3 BX276092.1-201ENST00000427368 251 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC-0.85□□□□□ -2.55
USF3Q68DE3 FRG2DP-202ENST00000566967 323 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 AL512427.1-201ENST00000618593 349 ntBASIC-0.85□□□□□ -2.55
USF3Q68DE3 Y_RNA.97-201ENST00000363094 102 ntBASIC-0.86□□□□□ -2.55
USF3Q68DE3 RNU6-1303P-201ENST00000364841 107 ntBASIC-0.86□□□□□ -2.55
USF3Q68DE3 RNU6-933P-201ENST00000384424 107 ntBASIC-0.86□□□□□ -2.55
USF3Q68DE3 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-0.86□□□□□ -2.55
USF3Q68DE3 RNA5SP33-201ENST00000516687 98 ntBASIC-0.86□□□□□ -2.55
USF3Q68DE3 RNU7-161P-201ENST00000517289 62 ntBASIC-0.86□□□□□ -2.55
USF3Q68DE3 AC104576.1-201ENST00000524225 88 ntBASIC-0.86□□□□□ -2.55
USF3Q68DE3 AP003072.1-201ENST00000531740 145 ntBASIC-0.86□□□□□ -2.55
USF3Q68DE3 AL662814.1-201ENST00000617364 121 ntBASIC-0.86□□□□□ -2.55
USF3Q68DE3 RNU6-1287P-201ENST00000362914 107 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 Y_RNA.361-201ENST00000365515 120 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 RNU6-1060P-201ENST00000384664 107 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 MTND3P8-201ENST00000412909 339 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 RPL30P10-201ENST00000488148 337 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 RNU2-13P-201ENST00000515909 113 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 RNU6-410P-201ENST00000517006 107 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 MIR4441-201ENST00000582623 100 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 MIR8055-201ENST00000610739 97 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 MIR6851-201ENST00000617060 67 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 MTND5P17-201ENST00000418405 1603 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 RNU6-702P-201ENST00000364982 107 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC-0.87□□□□□ -2.55
USF3Q68DE3 RPS27AP14-201ENST00000422868 454 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-0.87□□□□□ -2.55
USF3Q68DE3 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC-0.87□□□□□ -2.55
USF3Q68DE3 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 AC023510.2-201ENST00000622162 746 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 AL049777.1-201ENST00000622740 518 ntBASIC-0.87□□□□□ -2.55
USF3Q68DE3 SNORA1-201ENST00000384107 130 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 MTCYBP36-201ENST00000404146 440 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 GPR143P-201ENST00000434155 205 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC-0.88□□□□□ -2.55
USF3Q68DE3 RNA5SP180-201ENST00000516181 101 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 SNORD27.1-201ENST00000516319 72 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 RNU6-765P-201ENST00000516916 99 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 AC091144.1-201ENST00000519573 138 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 MTATP6P15-201ENST00000527233 835 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 MIR6507-201ENST00000613630 70 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 AC009248.2-201ENST00000619826 254 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 RNU6-502P-201ENST00000362419 108 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 MRPL42P2-201ENST00000403169 426 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-0.88□□□□□ -2.55
USF3Q68DE3 AC021146.9-201ENST00000512503 156 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 RNU6-1194P-201ENST00000516208 104 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 SCARNA24.1-201ENST00000516465 137 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 AC040926.1-201ENST00000530195 238 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 AC022878.1-201ENST00000530684 149 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 Z97988.1-201ENST00000637697 135 ntBASIC-0.88□□□□□ -2.55
USF3Q68DE3 U8.6-201ENST00000364939 135 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 SNORD50B-201ENST00000364995 70 ntBASIC-0.89□□□□□ -2.55
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms