Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 Y_RNA.651-201ENST00000459380 103 ntBASIC2.54□□□□□ -2
USP39Q53GS9 AC080013.2-201ENST00000460866 323 ntBASIC2.54□□□□□ -2
USP39Q53GS9 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.54□□□□□ -2
USP39Q53GS9 RNA5SP112-201ENST00000515937 99 ntBASIC2.54□□□□□ -2
USP39Q53GS9 RNU6-826P-201ENST00000516827 104 ntBASIC2.54□□□□□ -2
USP39Q53GS9 MIR1248-201ENST00000629190 106 ntBASIC2.54□□□□□ -2
USP39Q53GS9 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP39Q53GS9 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USP39Q53GS9 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USP39Q53GS9 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
USP39Q53GS9 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
USP39Q53GS9 Y_RNA.52-201ENST00000362760 96 ntBASIC2.53□□□□□ -2
USP39Q53GS9 Y_RNA.66-201ENST00000362862 102 ntBASIC2.53□□□□□ -2
USP39Q53GS9 RNU6-647P-201ENST00000364243 107 ntBASIC2.53□□□□□ -2
USP39Q53GS9 MIR524-201ENST00000385242 87 ntBASIC2.53□□□□□ -2
USP39Q53GS9 MIR548A3-201ENST00000385297 97 ntBASIC2.53□□□□□ -2
USP39Q53GS9 RNU6-220P-201ENST00000390919 107 ntBASIC2.53□□□□□ -2
USP39Q53GS9 MIR891A-201ENST00000401237 79 ntBASIC2.53□□□□□ -2
USP39Q53GS9 AC011753.1-201ENST00000451001 220 ntBASIC2.53□□□□□ -2
USP39Q53GS9 RPS27P22-201ENST00000478056 241 ntBASIC2.53□□□□□ -2
USP39Q53GS9 AC023141.11-201ENST00000508864 202 ntBASIC2.53□□□□□ -2
USP39Q53GS9 AC097462.1-201ENST00000514125 324 ntBASIC2.53□□□□□ -2
USP39Q53GS9 RN7SKP19-201ENST00000516016 252 ntBASIC2.53□□□□□ -2
USP39Q53GS9 IGKV1-22-201ENST00000524313 326 ntBASIC2.53□□□□□ -2
USP39Q53GS9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.53□□□□□ -2
USP39Q53GS9 AL049779.4-201ENST00000604500 156 ntBASIC2.53□□□□□ -2
USP39Q53GS9 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.53□□□□□ -2
USP39Q53GS9 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.53□□□□□ -2
USP39Q53GS9 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.53□□□□□ -2
USP39Q53GS9 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.53□□□□□ -2
USP39Q53GS9 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
USP39Q53GS9 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
USP39Q53GS9 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP39Q53GS9 RNU6-486P-201ENST00000363116 107 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 RNU6-1138P-201ENST00000365359 106 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 Y_RNA.486-201ENST00000384398 107 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 MIR624-201ENST00000385217 97 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 RNA5SP210-201ENST00000391034 120 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 U6atac.2-201ENST00000408644 118 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 AC008134.1-201ENST00000420943 193 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 AC003685.2-201ENST00000422795 395 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.52□□□□□ -2.01
USP39Q53GS9 AC007751.1-201ENST00000529260 376 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 MIR2681-201ENST00000581814 105 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 AC105245.1-201ENST00000581934 244 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 AL365205.2-201ENST00000594586 68 ntBASIC2.52□□□□□ -2.01
USP39Q53GS9 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.52□□□□□ -2.01
USP39Q53GS9 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.52□□□□□ -2.01
USP39Q53GS9 SNORD114-30-201ENST00000364448 72 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 AL359511.1-201ENST00000402970 211 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 MTCO1P44-201ENST00000441935 243 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.51□□□□□ -2.01
USP39Q53GS9 HMGN2P18-201ENST00000450680 270 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 RNU7-149P-201ENST00000516739 59 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 RNU6-586P-201ENST00000517265 104 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 AC011604.1-201ENST00000545978 196 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 PRELID2P1-201ENST00000552837 301 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 MIR4438-201ENST00000585271 93 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.51□□□□□ -2.01
USP39Q53GS9 AC245884.12-201ENST00000615364 59 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 Pinc.1-201ENST00000616452 154 ntBASIC2.51□□□□□ -2.01
USP39Q53GS9 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
USP39Q53GS9 AC008555.8-201ENST00000623602 2168 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP39Q53GS9 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP39Q53GS9 SNORD18B-201ENST00000365659 72 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 MIR548A1-201ENST00000385041 97 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
USP39Q53GS9 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
USP39Q53GS9 RN7SKP223-201ENST00000410582 62 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 AC234781.5-201ENST00000508429 271 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 RNU6-965P-201ENST00000516721 96 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 SCARNA3-201ENST00000517097 143 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 RNU7-172P-201ENST00000517125 64 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 AC004486.1-201ENST00000546846 233 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 MIR3199-1-201ENST00000582434 88 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 MIR3670-2-201ENST00000582974 65 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 MIR3670-1-201ENST00000584160 65 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 MIR3670-3-201ENST00000584855 65 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 AL022345.2-201ENST00000606307 135 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 MIR3670-4-201ENST00000612260 65 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
USP39Q53GS9 ZNF271P-202ENST00000465539 1970 ntBASIC2.5□□□□□ -2.01
USP39Q53GS9 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
USP39Q53GS9 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.49□□□□□ -2.01
USP39Q53GS9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
USP39Q53GS9 SNORA25.6-201ENST00000364121 118 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 DEFA7P-201ENST00000382676 285 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
USP39Q53GS9 RNA5SP127-201ENST00000411051 133 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.49□□□□□ -2.01
USP39Q53GS9 Y_RNA.649-201ENST00000459077 103 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 NDUFA4P2-201ENST00000489989 244 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 OR9P1P-201ENST00000496431 281 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 RNA5SP236-201ENST00000516169 116 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 SNORA72.7-201ENST00000516349 94 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 RNU2-34P-201ENST00000516534 121 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 AC025166.1-201ENST00000612411 163 ntBASIC2.49□□□□□ -2.01
USP39Q53GS9 AL121890.5-201ENST00000620848 304 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 194.4 ms