Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR4677-201ENST00000584153 80 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 JPX_2.1-201ENST00000614161 69 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 RNU6-501P-201ENST00000364072 100 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 RNU4-36P-201ENST00000364294 144 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.450-201ENST00000384198 113 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 GPR143P-201ENST00000434155 205 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 AC104576.1-201ENST00000524225 88 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 AC005771.1-201ENST00000585581 349 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 AC005828.6-201ENST00000606610 232 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 AC134878.1-201ENST00000619901 243 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 AC244669.1-204ENST00000621564 178 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 RNU6-324P-201ENST00000363957 106 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 RNU5A-6P-201ENST00000384136 116 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.517-201ENST00000384551 106 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 RNU6-855P-201ENST00000410395 104 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.697-201ENST00000516776 113 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 MIR6129-201ENST00000616087 109 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC027807.2-201ENST00000616099 408 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC073869.9-201ENST00000641610 120 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 SNORD14E-201ENST00000364009 85 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 RNU6-266P-201ENST00000364225 107 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AL512286.1-201ENST00000439244 400 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AL359672.1-201ENST00000442302 409 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 RPL30P15-201ENST00000457129 321 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 RNU6-107P-201ENST00000516643 102 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC022784.5-201ENST00000522241 437 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 MTND1P8-201ENST00000571424 950 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC008507.2-201ENST00000588402 1176 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC245014.2-201ENST00000603689 287 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AL670379.3-201ENST00000605040 251 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 Z84480.1-201ENST00000605131 311 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 MIR6740-201ENST00000618268 113 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AL138960.2-201ENST00000625145 535 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 MTND1P7-201ENST00000632801 297 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 SNORA20B-201ENST00000384220 132 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 SNORA72-201ENST00000384339 132 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 MIR521-1-201ENST00000384902 87 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 MTCO3P38-201ENST00000468910 766 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 MTATP6P15-201ENST00000527233 835 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AL157687.1-201ENST00000554853 619 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC084368.1-201ENST00000620935 65 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 SCARNA4-201ENST00000629045 128 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 AC068137.4-201ENST00000638485 296 ntBASIC-0.51□□□□□ -2.49
CHD9Q3L8U1 SNORD115-34-201ENST00000362441 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.22-201ENST00000362492 102 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-12-201ENST00000362583 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 RNU4-21P-201ENST00000362802 126 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-29-201ENST00000362834 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-9-201ENST00000362912 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-21-201ENST00000362963 81 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-14-201ENST00000363090 81 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-13-201ENST00000363358 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-11-201ENST00000363616 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-5-201ENST00000363633 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-39-201ENST00000363694 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-4-201ENST00000363810 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-16-201ENST00000363887 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-6-201ENST00000363942 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-42-201ENST00000364273 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-15-201ENST00000364809 81 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-1-201ENST00000364961 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-26-201ENST00000365067 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-10-201ENST00000365073 81 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORA1.2-201ENST00000365189 134 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-43-201ENST00000365503 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-36-201ENST00000365629 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 RNU6-809P-201ENST00000384461 107 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 RNU6-131P-201ENST00000391144 107 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 MIR873-201ENST00000401120 77 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 AL590002.1-201ENST00000406554 418 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 MTATP6P17-201ENST00000431030 672 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 POLR2KP2-201ENST00000438155 177 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 RNA5SP470-201ENST00000516463 106 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 RNU6-765P-201ENST00000516916 99 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 SNORD115-40-201ENST00000606510 82 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 MIR7107-201ENST00000611489 80 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 AC009159.2-201ENST00000617603 606 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.617-201ENST00000410920 90 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 AL353572.1-201ENST00000442490 417 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 HMGN2P32-201ENST00000444648 269 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 ZNF736P8Y-201ENST00000451913 669 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 GMFBP1-201ENST00000467831 427 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 AC125232.2-201ENST00000592457 143 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 RNU6-85P-201ENST00000605989 107 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 AL136370.1-201ENST00000608166 691 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 AC006441.5-201ENST00000612680 209 ntBASIC-0.52□□□□□ -2.49
CHD9Q3L8U1 RNU6-873P-201ENST00000363833 107 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 RNU6-715P-201ENST00000365204 103 ntBASIC-0.53□□□□□ -2.49
CHD9Q3L8U1 USMG5P1-201ENST00000425964 177 ntBASIC-0.53□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 195.3 ms