Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SNORA75.2-201ENST00000391138 150 ntBASIC0.7□□□□□ -2.3
MSH6P52701 SNORA75.3-201ENST00000391231 150 ntBASIC0.7□□□□□ -2.3
MSH6P52701 RNU6-192P-201ENST00000391253 100 ntBASIC0.7□□□□□ -2.3
MSH6P52701 AL031003.1-201ENST00000404229 172 ntBASIC0.7□□□□□ -2.3
MSH6P52701 RNU2-64P-201ENST00000411315 191 ntBASIC0.7□□□□□ -2.3
MSH6P52701 AC006461.1-201ENST00000412637 326 ntBASIC0.7□□□□□ -2.3
MSH6P52701 PDCL2P1-201ENST00000419302 352 ntBASIC0.7□□□□□ -2.3
MSH6P52701 RPEP5-201ENST00000441137 268 ntBASIC0.7□□□□□ -2.3
MSH6P52701 AC093019.1-201ENST00000443135 252 ntBASIC0.7□□□□□ -2.3
MSH6P52701 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.7□□□□□ -2.3
MSH6P52701 AP003716.2-201ENST00000528260 108 ntBASIC0.7□□□□□ -2.3
MSH6P52701 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.7□□□□□ -2.3
MSH6P52701 MIR5690-201ENST00000583739 73 ntBASIC0.7□□□□□ -2.3
MSH6P52701 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.7□□□□□ -2.3
MSH6P52701 AL627230.5-201ENST00000619807 58 ntBASIC0.7□□□□□ -2.3
MSH6P52701 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.7□□□□□ -2.3
MSH6P52701 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.7□□□□□ -2.3
MSH6P52701 RNU6-626P-201ENST00000363354 107 ntBASIC0.7□□□□□ -2.3
MSH6P52701 Y_RNA.172-201ENST00000363765 102 ntBASIC0.7□□□□□ -2.3
MSH6P52701 RNU6-1188P-201ENST00000363795 107 ntBASIC0.7□□□□□ -2.3
MSH6P52701 AC117470.1-201ENST00000381974 330 ntBASIC0.7□□□□□ -2.3
MSH6P52701 RNU6-926P-201ENST00000384075 107 ntBASIC0.7□□□□□ -2.3
MSH6P52701 SNORD116-13-201ENST00000384408 92 ntBASIC0.7□□□□□ -2.3
MSH6P52701 RNY3P4-201ENST00000384428 101 ntBASIC0.7□□□□□ -2.3
MSH6P52701 MIR452-201ENST00000385020 85 ntBASIC0.7□□□□□ -2.3
MSH6P52701 MIR100-201ENST00000385259 80 ntBASIC0.7□□□□□ -2.3
MSH6P52701 RNU2-61P-201ENST00000411069 191 ntBASIC0.7□□□□□ -2.3
MSH6P52701 AC114737.2-201ENST00000421583 173 ntBASIC0.7□□□□□ -2.3
MSH6P52701 FCF1P4-201ENST00000448326 183 ntBASIC0.7□□□□□ -2.3
MSH6P52701 Y_RNA.635-201ENST00000459041 101 ntBASIC0.7□□□□□ -2.3
MSH6P52701 PDCD5P2-201ENST00000507570 312 ntBASIC0.7□□□□□ -2.3
MSH6P52701 AC144568.1-201ENST00000520139 137 ntBASIC0.7□□□□□ -2.3
MSH6P52701 MIR608-201ENST00000384820 100 ntBASIC0.69□□□□□ -2.3
MSH6P52701 MT-TL1-201ENST00000386347 75 ntBASIC0.69□□□□□ -2.3
MSH6P52701 Y_RNA.621-201ENST00000411065 96 ntBASIC0.69□□□□□ -2.3
MSH6P52701 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.69□□□□□ -2.3
MSH6P52701 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.69□□□□□ -2.3
MSH6P52701 MTND4P17-201ENST00000470444 350 ntBASIC0.69□□□□□ -2.3
MSH6P52701 RNU6-470P-201ENST00000515954 104 ntBASIC0.69□□□□□ -2.3
MSH6P52701 RNU6-436P-201ENST00000516171 114 ntBASIC0.69□□□□□ -2.3
MSH6P52701 SNORD111.1-201ENST00000516421 86 ntBASIC0.69□□□□□ -2.3
MSH6P52701 RNU6-1012P-201ENST00000516606 109 ntBASIC0.69□□□□□ -2.3
MSH6P52701 AC022616.4-201ENST00000522985 181 ntBASIC0.69□□□□□ -2.3
MSH6P52701 AC022306.2-201ENST00000617563 647 ntBASIC0.69□□□□□ -2.3
MSH6P52701 RNA5SP264-201ENST00000363115 107 ntBASIC0.68□□□□□ -2.3
MSH6P52701 Y_RNA.160-201ENST00000363677 92 ntBASIC0.68□□□□□ -2.3
MSH6P52701 SNORD81.2-201ENST00000365153 76 ntBASIC0.68□□□□□ -2.3
MSH6P52701 RNU6-20P-201ENST00000384106 107 ntBASIC0.68□□□□□ -2.3
MSH6P52701 MIR522-201ENST00000385071 87 ntBASIC0.68□□□□□ -2.3
MSH6P52701 RNU6-370P-201ENST00000411008 104 ntBASIC0.68□□□□□ -2.3
MSH6P52701 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.68□□□□□ -2.3
MSH6P52701 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.68□□□□□ -2.3
MSH6P52701 RNA5SP255-201ENST00000516370 107 ntBASIC0.68□□□□□ -2.3
MSH6P52701 RNU6-197P-201ENST00000516680 100 ntBASIC0.68□□□□□ -2.3
MSH6P52701 RNU7-4P-201ENST00000516961 62 ntBASIC0.68□□□□□ -2.3
MSH6P52701 MTND4LP26-201ENST00000518144 282 ntBASIC0.68□□□□□ -2.3
MSH6P52701 AC090142.3-201ENST00000519012 385 ntBASIC0.68□□□□□ -2.3
MSH6P52701 AC136628.3-201ENST00000521868 290 ntBASIC0.68□□□□□ -2.3
MSH6P52701 AC005176.2-201ENST00000596933 147 ntBASIC0.68□□□□□ -2.3
MSH6P52701 AC139792.2-201ENST00000624218 587 ntBASIC0.68□□□□□ -2.3
MSH6P52701 TPTEP1-208ENST00000636884 213 ntBASIC0.68□□□□□ -2.3
MSH6P52701 Y_RNA.446-201ENST00000384178 104 ntBASIC0.67□□□□□ -2.3
MSH6P52701 MIR136-201ENST00000385207 82 ntBASIC0.67□□□□□ -2.3
MSH6P52701 MIR942-201ENST00000401111 86 ntBASIC0.67□□□□□ -2.3
MSH6P52701 MRPS18CP6-201ENST00000423587 223 ntBASIC0.67□□□□□ -2.3
MSH6P52701 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.67□□□□□ -2.3
MSH6P52701 PSMC1P5-201ENST00000512850 177 ntBASIC0.67□□□□□ -2.3
MSH6P52701 SNORA74.3-201ENST00000517108 154 ntBASIC0.67□□□□□ -2.3
MSH6P52701 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.67□□□□□ -2.3
MSH6P52701 AC005972.2-201ENST00000604690 348 ntBASIC0.67□□□□□ -2.3
MSH6P52701 AC067863.3-201ENST00000624172 122 ntBASIC0.67□□□□□ -2.3
MSH6P52701 RNU6-890P-201ENST00000384121 107 ntBASIC0.66□□□□□ -2.3
MSH6P52701 Y_RNA.474-201ENST00000384341 102 ntBASIC0.66□□□□□ -2.3
MSH6P52701 RNU6-733P-201ENST00000410759 104 ntBASIC0.66□□□□□ -2.3
MSH6P52701 PRDX4P1-201ENST00000507189 574 ntBASIC0.66□□□□□ -2.3
MSH6P52701 RNU6-966P-201ENST00000516479 104 ntBASIC0.66□□□□□ -2.3
MSH6P52701 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.66□□□□□ -2.3
MSH6P52701 AC092794.1-201ENST00000612734 582 ntBASIC0.66□□□□□ -2.3
MSH6P52701 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.3
MSH6P52701 Y_RNA.253-201ENST00000364562 112 ntBASIC0.65□□□□□ -2.31
MSH6P52701 SNORD78.2-201ENST00000391076 69 ntBASIC0.65□□□□□ -2.31
MSH6P52701 Y_RNA.605-201ENST00000410577 105 ntBASIC0.65□□□□□ -2.31
MSH6P52701 RPL30P15-201ENST00000457129 321 ntBASIC0.65□□□□□ -2.31
MSH6P52701 U8.19-201ENST00000459095 133 ntBASIC0.65□□□□□ -2.31
MSH6P52701 RNU7-169P-201ENST00000459456 61 ntBASIC0.65□□□□□ -2.31
MSH6P52701 RNU6-911P-201ENST00000516523 104 ntBASIC0.65□□□□□ -2.31
MSH6P52701 SNORD45.4-201ENST00000516629 73 ntBASIC0.65□□□□□ -2.31
MSH6P52701 MIR4659A-201ENST00000580269 81 ntBASIC0.65□□□□□ -2.31
MSH6P52701 RBM11P1-201ENST00000604951 799 ntBASIC0.65□□□□□ -2.31
MSH6P52701 AC022441.3-201ENST00000605737 136 ntBASIC0.65□□□□□ -2.31
MSH6P52701 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.65□□□□□ -2.31
MSH6P52701 AC138305.3-201ENST00000624988 240 ntBASIC0.65□□□□□ -2.31
MSH6P52701 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
MSH6P52701 RNU6-1084P-201ENST00000362498 107 ntBASIC0.64□□□□□ -2.31
MSH6P52701 RNY3P11-201ENST00000364153 102 ntBASIC0.64□□□□□ -2.31
MSH6P52701 Y_RNA.230-201ENST00000364348 109 ntBASIC0.64□□□□□ -2.31
MSH6P52701 Y_RNA.248-201ENST00000364501 109 ntBASIC0.64□□□□□ -2.31
MSH6P52701 MIR520C-201ENST00000385005 87 ntBASIC0.64□□□□□ -2.31
MSH6P52701 MIR516B2-201ENST00000385190 85 ntBASIC0.64□□□□□ -2.31
MSH6P52701 RNU6-876P-201ENST00000391295 104 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms