Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC105029.1-201ENST00000520250 669 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.22□□□□□ -2.37
COL18A1P39060 MIR5701-3-201ENST00000578890 82 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 MIR5701-1-201ENST00000585138 82 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 AL355073.2-201ENST00000612106 557 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 MIR5701-2-201ENST00000615634 82 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 MIR3662-201ENST00000637030 95 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.22□□□□□ -2.37
COL18A1P39060 RNA5SP98-201ENST00000363158 137 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 RNU6-396P-201ENST00000365369 105 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 RNU6-780P-201ENST00000391030 104 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 MIR1468-201ENST00000410600 86 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 MRPS18CP6-201ENST00000423587 223 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 SNORD123-201ENST00000459473 70 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 SNORA40.9-201ENST00000515895 93 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.22□□□□□ -2.37
COL18A1P39060 AC004467.1-201ENST00000615678 330 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 RNU6-131P-201ENST00000391144 107 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 AL139396.1-201ENST00000421137 167 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.21□□□□□ -2.38
COL18A1P39060 MTND2P22-201ENST00000444325 1033 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 HMGN2P32-201ENST00000444648 269 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 RNU6-506P-201ENST00000516553 94 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 RNU6-273P-201ENST00000516937 96 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 MIR548AR-201ENST00000582191 57 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 AC005972.2-201ENST00000604690 348 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 AL162730.1-201ENST00000605734 292 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 RNU6-94P-201ENST00000607728 107 ntBASIC0.21□□□□□ -2.38
COL18A1P39060 SNORA9.1-201ENST00000362412 131 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 Y_RNA.301-201ENST00000364990 103 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 SNORD50B-201ENST00000364995 70 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 Y_RNA.358-201ENST00000365491 99 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 Y_RNA.370-201ENST00000365589 108 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.2□□□□□ -2.38
COL18A1P39060 AL390729.2-201ENST00000416137 156 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 MTCO2P12-201ENST00000427426 682 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 MTND2P38-201ENST00000522536 667 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 AC005899.2-201ENST00000584353 90 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 AF250324.2-201ENST00000608299 610 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 MIR4251-201ENST00000635819 61 ntBASIC0.2□□□□□ -2.38
COL18A1P39060 Y_RNA.361-201ENST00000365515 120 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 Y_RNA.368-201ENST00000365547 113 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 Y_RNA.457-201ENST00000384237 111 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 MIR181A1-201ENST00000385026 110 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 SNORD12B-201ENST00000410433 91 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 AC074085.1-201ENST00000413598 418 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC0.19□□□□□ -2.38
COL18A1P39060 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.19□□□□□ -2.38
COL18A1P39060 RNU6-408P-201ENST00000515910 100 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 AL355375.2-201ENST00000574825 175 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 AC018462.2-201ENST00000605375 395 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 AC090617.10-201ENST00000624308 134 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 Y_RNA.148-201ENST00000363557 117 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 RNU6-1059P-201ENST00000363752 98 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 SNORD116-1-201ENST00000384335 95 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 SNORD38C-201ENST00000384381 69 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 RNA5SP118-201ENST00000410385 109 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 RNU6-613P-201ENST00000410412 108 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 RNU6-177P-201ENST00000411257 104 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 MTND1P17-201ENST00000448961 204 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 AC098826.2-201ENST00000452011 651 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 Y_RNA.682-201ENST00000516457 100 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 MIR2115-201ENST00000516657 100 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.19□□□□□ -2.38
COL18A1P39060 AC109635.3-201ENST00000529536 185 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 AC245505.1-201ENST00000556398 224 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 MIR5093-201ENST00000583199 100 ntBASIC0.19□□□□□ -2.38
COL18A1P39060 RNU6-1327P-201ENST00000365302 105 ntBASIC0.18□□□□□ -2.38
COL18A1P39060 RNU6-318P-201ENST00000384283 103 ntBASIC0.18□□□□□ -2.38
COL18A1P39060 MIR1302-7-201ENST00000408841 72 ntBASIC0.18□□□□□ -2.38
COL18A1P39060 AC116353.2-201ENST00000505332 712 ntBASIC0.18□□□□□ -2.38
COL18A1P39060 SNORA25.10-201ENST00000515926 124 ntBASIC0.18□□□□□ -2.38
COL18A1P39060 RNU6-1314P-201ENST00000517139 104 ntBASIC0.18□□□□□ -2.38
COL18A1P39060 RNU2-12P-201ENST00000517216 168 ntBASIC0.18□□□□□ -2.38
COL18A1P39060 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.18□□□□□ -2.38
COL18A1P39060 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.18□□□□□ -2.38
COL18A1P39060 Y_RNA.9-201ENST00000362354 101 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 Y_RNA.51-201ENST00000362725 102 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 Y_RNA.157-201ENST00000363638 102 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNY4P14-201ENST00000363656 96 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU6-593P-201ENST00000364716 112 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU4-45P-201ENST00000365469 141 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 MIR140-201ENST00000385282 100 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU6-510P-201ENST00000391239 108 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU2-16P-201ENST00000410712 136 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.17□□□□□ -2.38
COL18A1P39060 AC015726.2-201ENST00000620112 122 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 AC100810.6-201ENST00000638068 285 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU6-1301P-201ENST00000362724 104 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 Y_RNA.168-201ENST00000363740 102 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU6-654P-201ENST00000364373 107 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 Y_RNA.253-201ENST00000364562 112 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU6-934P-201ENST00000365154 107 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 Y_RNA.552-201ENST00000384665 112 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU6-1050P-201ENST00000410388 107 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.17□□□□□ -2.38
COL18A1P39060 SNRPGP10-201ENST00000432323 225 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 AC026782.1-201ENST00000512952 449 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU6-977P-201ENST00000516411 103 ntBASIC0.17□□□□□ -2.38
COL18A1P39060 RNU6-324P-201ENST00000363957 106 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms