Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Gm27867-201ENSMUST00000184778 125 ntBASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Shroom3Q9QXN0 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Shroom3Q9QXN0 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Bpifb5-201ENSMUST00000045959 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC16.03■□□□□ 0.16
Shroom3Q9QXN0 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 AC132104.2-201ENSMUST00000215011 266 ntBASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Shroom3Q9QXN0 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Gm25406-201ENSMUST00000157599 105 ntBASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Shroom3Q9QXN0 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Mir6404-201ENSMUST00000183699 94 ntBASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC16.01■□□□□ 0.15
Shroom3Q9QXN0 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms