Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.98■□□□□ 0.47
Ushbp1Q8R370 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Ushbp1Q8R370 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Ushbp1Q8R370 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
Ushbp1Q8R370 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Ushbp1Q8R370 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Ushbp1Q8R370 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.93■□□□□ 0.46
Ushbp1Q8R370 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ushbp1Q8R370 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ushbp1Q8R370 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms