Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Sh3rf1Q69ZI1 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Wnt10b-204ENSMUST00000226655 1807 ntBASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 AC159205.3-201ENSMUST00000224614 874 ntBASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Sh3rf1Q69ZI1 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 App-207ENSMUST00000227737 2827 ntBASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Gm14464-201ENSMUST00000119658 1254 ntBASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Gm17808-201ENSMUST00000200859 894 ntBASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Sh3rf1Q69ZI1 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Gm3272-201ENSMUST00000181181 1229 ntBASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Gm10566-201ENSMUST00000086739 996 ntBASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Sh3rf1Q69ZI1 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
Sh3rf1Q69ZI1 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Sh3rf1Q69ZI1 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Sh3rf1Q69ZI1 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC16.27■□□□□ 0.19
Sh3rf1Q69ZI1 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
Sh3rf1Q69ZI1 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
Sh3rf1Q69ZI1 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Sh3rf1Q69ZI1 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Sh3rf1Q69ZI1 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Gm11355-201ENSMUST00000121120 306 ntBASIC16.26■□□□□ 0.19
Sh3rf1Q69ZI1 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 57.2 ms