Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Upf3aQ3ULJ3 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Upf3aQ3ULJ3 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Upf3aQ3ULJ3 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Upf3aQ3ULJ3 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Upf3aQ3ULJ3 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Upf3aQ3ULJ3 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
Upf3aQ3ULJ3 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
Upf3aQ3ULJ3 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
Upf3aQ3ULJ3 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Gm8344-201ENSMUST00000119813 856 ntBASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Gm37153-201ENSMUST00000193637 231 ntBASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Adamtsl1-201ENSMUST00000048885 1842 ntTSL 5 BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Upf3aQ3ULJ3 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 AC151286.1-201ENSMUST00000198489 145 ntBASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Upf3aQ3ULJ3 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Gm44945-201ENSMUST00000206764 1187 ntBASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Gm45167-201ENSMUST00000208007 322 ntBASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Upf3aQ3ULJ3 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf3aQ3ULJ3 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms