Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.68■□□□□ 0.42
Col6a1Q04857 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a1Q04857 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
Col6a1Q04857 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Col6a1Q04857 Gm4459-201ENSMUST00000118750 468 ntBASIC17.68■□□□□ 0.42
Col6a1Q04857 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.68■□□□□ 0.42
Col6a1Q04857 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC17.68■□□□□ 0.42
Col6a1Q04857 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.68■□□□□ 0.42
Col6a1Q04857 Gm15500-202ENSMUST00000071641 1019 ntBASIC17.68■□□□□ 0.42
Col6a1Q04857 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a1Q04857 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.68■□□□□ 0.42
Col6a1Q04857 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a1Q04857 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a1Q04857 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC17.68■□□□□ 0.42
Col6a1Q04857 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a1Q04857 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.68■□□□□ 0.42
Col6a1Q04857 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col6a1Q04857 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Col6a1Q04857 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.67■□□□□ 0.42
Col6a1Q04857 Gm8784-201ENSMUST00000222096 1435 ntBASIC17.67■□□□□ 0.42
Col6a1Q04857 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
Col6a1Q04857 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC17.67■□□□□ 0.42
Col6a1Q04857 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC17.67■□□□□ 0.42
Col6a1Q04857 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Col6a1Q04857 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.67■□□□□ 0.42
Col6a1Q04857 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Gm28265-201ENSMUST00000188201 2319 ntBASIC17.67■□□□□ 0.42
Col6a1Q04857 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.67■□□□□ 0.42
Col6a1Q04857 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col6a1Q04857 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Gm11025-201ENSMUST00000140773 466 ntBASIC17.66■□□□□ 0.42
Col6a1Q04857 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Col6a1Q04857 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.66■□□□□ 0.42
Col6a1Q04857 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Gm7507-201ENSMUST00000183053 1008 ntBASIC17.66■□□□□ 0.42
Col6a1Q04857 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Col6a1Q04857 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col6a1Q04857 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Col6a1Q04857 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC17.65■□□□□ 0.42
Col6a1Q04857 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.65■□□□□ 0.42
Col6a1Q04857 AC174742.1-201ENSMUST00000218272 304 ntBASIC17.65■□□□□ 0.42
Col6a1Q04857 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Col6a1Q04857 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col6a1Q04857 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col6a1Q04857 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col6a1Q04857 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Col6a1Q04857 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Gm14701-201ENSMUST00000117156 348 ntBASIC17.64■□□□□ 0.41
Col6a1Q04857 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Gm8655-201ENSMUST00000221159 852 ntBASIC17.64■□□□□ 0.41
Col6a1Q04857 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col6a1Q04857 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms