Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Rfx1P48377 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Rfx1P48377 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.23■□□□□ 0.67
Rfx1P48377 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rfx1P48377 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC19.22■□□□□ 0.67
Rfx1P48377 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Rfx1P48377 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.22■□□□□ 0.67
Rfx1P48377 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Rfx1P48377 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rfx1P48377 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Rfx1P48377 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
Rfx1P48377 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Asic1-205ENSMUST00000228185 1818 ntBASIC19.21■□□□□ 0.67
Rfx1P48377 Dok1-201ENSMUST00000089651 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.21■□□□□ 0.67
Rfx1P48377 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.21■□□□□ 0.67
Rfx1P48377 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Gm44450-201ENSMUST00000199528 114 ntBASIC19.21■□□□□ 0.67
Rfx1P48377 Gm3375-201ENSMUST00000203929 796 ntBASIC19.21■□□□□ 0.67
Rfx1P48377 Tatdn2-205ENSMUST00000204753 2645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Rfx1P48377 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rfx1P48377 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Rfx1P48377 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.2■□□□□ 0.66
Rfx1P48377 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC19.2■□□□□ 0.66
Rfx1P48377 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC19.2■□□□□ 0.66
Rfx1P48377 Gm43353-201ENSMUST00000199224 1295 ntBASIC19.2■□□□□ 0.66
Rfx1P48377 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Rfx1P48377 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC19.2■□□□□ 0.66
Rfx1P48377 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rfx1P48377 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Rfx1P48377 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC19.19■□□□□ 0.66
Rfx1P48377 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC19.19■□□□□ 0.66
Rfx1P48377 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Rfx1P48377 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Rfx1P48377 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rfx1P48377 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Rfx1P48377 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Rfx1P48377 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC19.18■□□□□ 0.66
Rfx1P48377 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Gm18115-201ENSMUST00000221209 621 ntBASIC19.18■□□□□ 0.66
Rfx1P48377 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC19.18■□□□□ 0.66
Rfx1P48377 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Rfx1P48377 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms