Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Cdx1P18111 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Cdx1P18111 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Cdx1P18111 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC12.99□□□□□ -0.33
Cdx1P18111 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC12.99□□□□□ -0.33
Cdx1P18111 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Gm37019-201ENSMUST00000192133 2134 ntBASIC12.99□□□□□ -0.33
Cdx1P18111 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC12.99□□□□□ -0.33
Cdx1P18111 Gm43799-201ENSMUST00000201845 579 ntBASIC12.99□□□□□ -0.33
Cdx1P18111 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Gm44443-201ENSMUST00000204396 5633 ntBASIC12.99□□□□□ -0.33
Cdx1P18111 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
Cdx1P18111 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Cdx1P18111 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Cdx1P18111 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Cdx1P18111 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Cdx1P18111 Sdc1-205ENSMUST00000171158 2311 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC12.98□□□□□ -0.33
Cdx1P18111 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
Cdx1P18111 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Mir6349-201ENSMUST00000184059 97 ntBASIC12.98□□□□□ -0.33
Cdx1P18111 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC12.98□□□□□ -0.33
Cdx1P18111 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC12.98□□□□□ -0.33
Cdx1P18111 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Cdx1P18111 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC12.98□□□□□ -0.33
Cdx1P18111 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
Cdx1P18111 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Cdx1P18111 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Cdx1P18111 AC163637.1-201ENSMUST00000215491 1894 ntBASIC12.97□□□□□ -0.33
Cdx1P18111 Gm12462-201ENSMUST00000140826 3056 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Cdx1P18111 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC12.97□□□□□ -0.33
Cdx1P18111 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Gm38345-201ENSMUST00000192635 1748 ntBASIC12.97□□□□□ -0.33
Cdx1P18111 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Cdx1P18111 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Cdx1P18111 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms