Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RaraP11416 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RaraP11416 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 B230217O12Rik-201ENSMUST00000181921 1642 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC17.36■□□□□ 0.37
RaraP11416 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Gm38327-201ENSMUST00000195852 1755 ntBASIC17.36■□□□□ 0.37
RaraP11416 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RaraP11416 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.36■□□□□ 0.37
RaraP11416 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.36■□□□□ 0.37
RaraP11416 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
RaraP11416 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC17.36■□□□□ 0.37
RaraP11416 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.36■□□□□ 0.37
RaraP11416 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RaraP11416 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
RaraP11416 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC17.35■□□□□ 0.37
RaraP11416 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC17.35■□□□□ 0.37
RaraP11416 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Gm27389-201ENSMUST00000183622 195 ntBASIC17.35■□□□□ 0.37
RaraP11416 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
RaraP11416 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
RaraP11416 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Gm6858-201ENSMUST00000208582 1468 ntBASIC17.35■□□□□ 0.37
RaraP11416 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.35■□□□□ 0.37
RaraP11416 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
RaraP11416 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
RaraP11416 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
RaraP11416 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
RaraP11416 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
RaraP11416 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.34■□□□□ 0.37
RaraP11416 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC17.34■□□□□ 0.37
RaraP11416 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Rab32-201ENSMUST00000019974 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC17.34■□□□□ 0.37
RaraP11416 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
RaraP11416 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.34■□□□□ 0.37
RaraP11416 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC17.34■□□□□ 0.37
RaraP11416 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.34■□□□□ 0.37
RaraP11416 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
RaraP11416 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC17.33■□□□□ 0.37
RaraP11416 1600020E01Rik-207ENSMUST00000204738 1997 ntTSL 5 BASIC17.33■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 59.1 ms