Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chmp6P0C0A3 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chmp6P0C0A3 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chmp6P0C0A3 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Gm10052-201ENSMUST00000168019 960 ntBASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Gm27742-201ENSMUST00000184667 60 ntBASIC17.46■□□□□ 0.39
Chmp6P0C0A3 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Gm7729-201ENSMUST00000050143 801 ntBASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Chmp6P0C0A3 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
Chmp6P0C0A3 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Gm10819-201ENSMUST00000099988 561 ntBASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chmp6P0C0A3 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chmp6P0C0A3 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms