Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lmx1bO88609 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lmx1bO88609 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Lmx1bO88609 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lmx1bO88609 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lmx1bO88609 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC14.52□□□□□ -0.08
Lmx1bO88609 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lmx1bO88609 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.52□□□□□ -0.09
Lmx1bO88609 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.52□□□□□ -0.09
Lmx1bO88609 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.52□□□□□ -0.09
Lmx1bO88609 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC14.52□□□□□ -0.09
Lmx1bO88609 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lmx1bO88609 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lmx1bO88609 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lmx1bO88609 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lmx1bO88609 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
Lmx1bO88609 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC14.51□□□□□ -0.09
Lmx1bO88609 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC14.51□□□□□ -0.09
Lmx1bO88609 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
Lmx1bO88609 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Lmx1bO88609 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lmx1bO88609 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lmx1bO88609 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lmx1bO88609 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lmx1bO88609 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC14.5□□□□□ -0.09
Lmx1bO88609 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC14.5□□□□□ -0.09
Lmx1bO88609 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Lmx1bO88609 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Lmx1bO88609 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Lmx1bO88609 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC14.49□□□□□ -0.09
Lmx1bO88609 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC14.49□□□□□ -0.09
Lmx1bO88609 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Lmx1bO88609 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
Lmx1bO88609 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Lmx1bO88609 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Lmx1bO88609 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms