Protein–RNA interactions for Protein: B1AVK5

Col4a6, Collagen, type IV, alpha 6, mousemouse

Predictions only

Length 1,691 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a6B1AVK5 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Gm9385-201ENSMUST00000117563 472 ntBASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Gm20949-201ENSMUST00000206478 952 ntBASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Col4a6B1AVK5 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Col4a6B1AVK5 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Rprl2-201ENSMUST00000157150 290 ntBASIC16.38■□□□□ 0.21
Col4a6B1AVK5 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Col4a6B1AVK5 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Rbfox2-206ENSMUST00000227314 1810 ntBASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Gm18889-201ENSMUST00000174284 929 ntBASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Gm7286-201ENSMUST00000182691 1007 ntBASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Gpr146-202ENSMUST00000053120 1040 ntBASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Col4a6B1AVK5 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Col4a6B1AVK5 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms