Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC005042.3-201ENST00000453230 174 ntBASIC1.26□□□□□ -2.21
PCDHGA1Q9Y5H4 Y_RNA.639-201ENST00000458981 102 ntBASIC1.26□□□□□ -2.21
PCDHGA1Q9Y5H4 AC004223.1-201ENST00000479840 271 ntBASIC1.26□□□□□ -2.21
PCDHGA1Q9Y5H4 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.26□□□□□ -2.21
PCDHGA1Q9Y5H4 AL050343.2-201ENST00000607338 280 ntBASIC1.26□□□□□ -2.21
PCDHGA1Q9Y5H4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
PCDHGA1Q9Y5H4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
PCDHGA1Q9Y5H4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 MIRLET7C-201ENST00000362160 84 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 MIR1302-11-201ENST00000408051 138 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 MIR1302-9-201ENST00000408365 138 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 MIR1302-10-201ENST00000408734 138 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 MCFD2P1-201ENST00000417812 300 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 U8.20-201ENST00000459445 131 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 RNA5SP480-201ENST00000516840 109 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 MIR4778-201ENST00000577635 80 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 MIR1302-2-201ENST00000607096 138 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 AC007485.1-201ENST00000616755 206 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 AC091812.1-201ENST00000432235 1948 ntBASIC1.25□□□□□ -2.21
PCDHGA1Q9Y5H4 MIR369-201ENST00000362155 70 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 RNU6-199P-201ENST00000362954 107 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 RNU5E-4P-201ENST00000364931 120 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 Y_RNA.329-201ENST00000365209 107 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 SNORD14.1-201ENST00000365609 90 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 Y_RNA.439-201ENST00000384119 94 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 SNORD63-201ENST00000384262 68 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 MIR653-201ENST00000385279 96 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 COX6CP14-201ENST00000469580 174 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 AC092991.1-201ENST00000477176 376 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 RNU6-322P-201ENST00000516010 103 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 RNU7-12P-201ENST00000516030 62 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 Y_RNA.713-201ENST00000517013 96 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 AC040926.1-201ENST00000530195 238 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 AC106754.2-201ENST00000623006 233 ntBASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.24□□□□□ -2.21
PCDHGA1Q9Y5H4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 RNU4-50P-201ENST00000364361 141 ntBASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 Y_RNA.331-201ENST00000365267 102 ntBASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 RNU6-710P-201ENST00000410424 105 ntBASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 MTND4P19-201ENST00000446659 478 ntBASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 RNA5SP61-201ENST00000516453 100 ntBASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 AC005972.2-201ENST00000604690 348 ntBASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 AC004832.4-201ENST00000608952 331 ntBASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 AC090971.5-201ENST00000621102 293 ntBASIC1.23□□□□□ -2.21
PCDHGA1Q9Y5H4 SNORD81.1-201ENST00000363064 77 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 Y_RNA.354-201ENST00000365448 111 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 RNU6-1080P-201ENST00000383982 107 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 Y_RNA.471-201ENST00000384312 102 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 Y_RNA.551-201ENST00000384661 102 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 RPS20P10-201ENST00000451209 253 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 AC093850.1-201ENST00000454121 251 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 AC022616.4-201ENST00000522985 181 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 AC011373.1-201ENST00000607270 237 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 GHRLOS.1-201ENST00000610995 70 ntBASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
PCDHGA1Q9Y5H4 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 RNA5SP327-201ENST00000362494 101 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 Y_RNA.31-201ENST00000362574 102 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 SNORA2.2-201ENST00000365473 135 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 SNORA25.10-201ENST00000515926 124 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU7-40P-201ENST00000516397 64 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 AC090049.2-201ENST00000550377 109 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 FAM106DP-201ENST00000586416 501 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 AL357312.1-201ENST00000603879 298 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 AL160413.1-201ENST00000622780 310 ntBASIC1.21□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU6-833P-201ENST00000363486 107 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 Y_RNA.143-201ENST00000363520 106 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 SNORD114-26-201ENST00000363543 72 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 Y_RNA.310-201ENST00000365063 113 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 Y_RNA.424-201ENST00000384063 103 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 Y_RNA.445-201ENST00000384168 102 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU6-937P-201ENST00000384325 106 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU6-1105P-201ENST00000384774 107 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 MIR520E-201ENST00000384867 87 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 MIR222-201ENST00000384992 110 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 MIR758-201ENST00000390227 88 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 Y_RNA.621-201ENST00000411065 96 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 PMCHL1-202ENST00000423102 261 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 AL133373.1-201ENST00000497098 94 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 SNORA31.4-201ENST00000516049 129 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU6-917P-201ENST00000516294 104 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU7-110P-201ENST00000516891 62 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU6-165P-201ENST00000517170 99 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 RNU6-1116P-201ENST00000517269 99 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 MIR151B-201ENST00000584249 96 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 PART1_1.1-201ENST00000611761 217 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 AL591926.4-201ENST00000616895 298 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 MIR6515-201ENST00000619843 57 ntBASIC1.2□□□□□ -2.22
PCDHGA1Q9Y5H4 AC027279.3-201ENST00000625055 122 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 194.7 ms