Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU7-175P-201ENST00000515915 61 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 RNA5SP227-201ENST00000516184 113 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 MIR4771-2-201ENST00000577758 74 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 MIR4771-1-201ENST00000582617 74 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 MIR4791-201ENST00000607666 84 ntBASIC-0.2□□□□□ -2.44
SCN3AQ9NY46 SNORD50.1-201ENST00000362987 71 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNU6-254P-201ENST00000363377 107 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNU6V-201ENST00000384105 107 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNU6-584P-201ENST00000410350 95 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNA5SP268-201ENST00000516828 124 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 AC090617.3-201ENST00000573670 475 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 MIR6863-201ENST00000636112 90 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 SNORA1.2-201ENST00000365189 134 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.481-201ENST00000384373 102 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNU6-929P-201ENST00000384429 107 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 MIR518F-201ENST00000384973 87 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 MIR125B2-201ENST00000385128 89 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNA5SP496-201ENST00000391240 109 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 U8.17-201ENST00000391292 132 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNU2-54P-201ENST00000410299 190 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 MLLT10P1-201ENST00000418346 262 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 MRPS10P2-201ENST00000431226 381 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 HMGN2P32-201ENST00000444648 269 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 AC083904.1-201ENST00000487828 231 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNA5SP401-201ENST00000515920 127 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RN7SKP287-201ENST00000516546 266 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 RNU6-782P-201ENST00000516852 104 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 SNORD92-201ENST00000585078 85 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 POLR3GP1-201ENST00000594073 261 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 AC004223.4-201ENST00000612426 332 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 MIR371B-201ENST00000638082 66 ntBASIC-0.21□□□□□ -2.44
SCN3AQ9NY46 ZNF299P-201ENST00000406845 1804 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 AC106754.1-201ENST00000562632 1513 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 Y_RNA.231-201ENST00000364358 102 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-522P-201ENST00000364497 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-767P-201ENST00000384132 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-297P-201ENST00000384636 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 MIR593-201ENST00000384856 100 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 MIR145-201ENST00000384967 88 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 SNORA26.8-201ENST00000391306 124 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-248P-201ENST00000410720 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 AL390729.2-201ENST00000416137 156 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 AC090844.1-201ENST00000422019 156 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 AC005042.3-201ENST00000453230 174 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-848P-201ENST00000515948 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-617P-201ENST00000516147 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-473P-201ENST00000516164 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 AC134698.4-201ENST00000523451 826 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 MIR4528-201ENST00000577763 90 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 Z94722.1-201ENST00000604328 474 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 AC087588.2-201ENST00000617667 426 ntBASIC-0.22□□□□□ -2.44
SCN3AQ9NY46 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 MIR101-1-201ENST00000362265 75 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 SNORD114-31-201ENST00000363219 75 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 RNU6-46P-201ENST00000383860 107 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 MIR522-201ENST00000385071 87 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 RNU6-269P-201ENST00000391077 97 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 SNRPGP14-201ENST00000435400 219 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 MIR18B-201ENST00000454574 71 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 RNU6-1038P-201ENST00000516516 104 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 RNU6-232P-201ENST00000517144 64 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 RNU7-181P-201ENST00000517234 74 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 AC005972.2-201ENST00000604690 348 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 RNU6-815P-201ENST00000384080 113 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 RN7SKP142-201ENST00000411236 328 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 MTND3P21-201ENST00000433774 331 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 snoU13.19-201ENST00000459148 104 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 RNU7-185P-201ENST00000459215 60 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 snoU13.16-201ENST00000459350 104 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 MIR2115-201ENST00000516657 100 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 AC027449.1-201ENST00000608890 407 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 JPX_2.1-201ENST00000614161 69 ntBASIC-0.23□□□□□ -2.45
SCN3AQ9NY46 U8.19-201ENST00000459095 133 ntBASIC-0.24□□□□□ -2.45
SCN3AQ9NY46 U8.22-201ENST00000459141 133 ntBASIC-0.24□□□□□ -2.45
SCN3AQ9NY46 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC-0.24□□□□□ -2.45
SCN3AQ9NY46 MIR5188-201ENST00000583467 113 ntBASIC-0.24□□□□□ -2.45
SCN3AQ9NY46 RBM11P1-201ENST00000604951 799 ntBASIC-0.24□□□□□ -2.45
SCN3AQ9NY46 AC091931.1-201ENST00000623488 728 ntBASIC-0.24□□□□□ -2.45
SCN3AQ9NY46 SNORD114-12-201ENST00000365400 75 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 RNU6-332P-201ENST00000391193 108 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 HMGN2P22-201ENST00000427588 175 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 UBE2V1P7-201ENST00000446395 340 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 MTND1P11-201ENST00000456661 876 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 RNU7-62P-201ENST00000458856 62 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 RNU6-625P-201ENST00000459412 107 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 AC022306.2-201ENST00000617563 647 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 Z69908.1-201ENST00000622603 247 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 AL162376.1-201ENST00000624117 175 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 RNA5SP331-201ENST00000364986 107 ntBASIC-0.25□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 191.8 ms