Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 Y_RNA.194-201ENST00000363985 102 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
TREX1Q9NSU2 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 Y_RNA.594-201ENST00000410373 140 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 RNU6-1050P-201ENST00000410388 107 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 RNU6-1304P-201ENST00000411374 106 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.38□□□□□ -2.35
TREX1Q9NSU2 MTND5P5-201ENST00000503764 376 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.38□□□□□ -2.35
TREX1Q9NSU2 RNU7-43P-201ENST00000516554 64 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 AC024909.2-201ENST00000553035 286 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 AC243829.6-201ENST00000612652 106 ntBASIC0.38□□□□□ -2.35
TREX1Q9NSU2 Y_RNA.89-201ENST00000363031 102 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 RNU4-75P-201ENST00000364621 146 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 SNORD113.3-201ENST00000364630 78 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 VTRNA1-3-201ENST00000365645 89 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 AC117470.1-201ENST00000381974 330 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 SNORA2B-201ENST00000384583 137 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 Y_RNA.573-201ENST00000384763 105 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 RNU6-1237P-201ENST00000384777 107 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 MIR522-201ENST00000385071 87 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 AC244098.3-201ENST00000424803 96 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 SNORD123-201ENST00000459473 70 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 RNU6-1016P-201ENST00000516689 94 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.37□□□□□ -2.35
TREX1Q9NSU2 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.37□□□□□ -2.35
TREX1Q9NSU2 AC006380.1-201ENST00000603598 186 ntBASIC0.37□□□□□ -2.35
TREX1Q9NSU2 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.37□□□□□ -2.35
TREX1Q9NSU2 MIR1-1-201ENST00000362147 71 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 Y_RNA.85-201ENST00000363014 111 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 SNORD18A-201ENST00000363753 72 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 SNORD115-30-201ENST00000364117 82 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 Y_RNA.253-201ENST00000364562 112 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 Y_RNA.295-201ENST00000364918 102 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 snoU2-30.1-201ENST00000365012 70 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 Y_RNA.554-201ENST00000384672 102 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 MIR625-201ENST00000385047 85 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 SNORD105-201ENST00000386910 85 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.36□□□□□ -2.35
TREX1Q9NSU2 AC012433.1-201ENST00000588916 398 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 MIR1244-1-201ENST00000612829 85 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 MIR1244-3-201ENST00000635744 85 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 MIR1244-2-201ENST00000636449 85 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 MIR1244-4-202ENST00000636813 85 ntBASIC0.36□□□□□ -2.35
TREX1Q9NSU2 RNA5SP325-201ENST00000363756 130 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 RNU6-654P-201ENST00000364373 107 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 RNU6-926P-201ENST00000384075 107 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 RNU6-131P-201ENST00000391144 107 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 RNA5SP118-201ENST00000410385 109 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 AC244023.1-201ENST00000426884 112 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 RPL7P42-201ENST00000481005 679 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 SNORA25.10-201ENST00000515926 124 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 RNU11-2P-201ENST00000516898 142 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 Y_RNA.708-201ENST00000516950 96 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 RNU2-12P-201ENST00000517216 168 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.35□□□□□ -2.35
TREX1Q9NSU2 AC242498.1-201ENST00000604134 111 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 AC243994.1-201ENST00000618627 109 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 MIR6516-201ENST00000630554 81 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 MIR4251-201ENST00000635819 61 ntBASIC0.35□□□□□ -2.35
TREX1Q9NSU2 AC134026.1-201ENST00000623249 2239 ntBASIC0.34□□□□□ -2.35
TREX1Q9NSU2 RNU6-324P-201ENST00000363957 106 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 Y_RNA.450-201ENST00000384198 113 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 AL031003.1-201ENST00000404229 172 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 MIR548F5-201ENST00000408421 86 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 RNA5SP95-201ENST00000410319 137 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 MRPS18CP6-201ENST00000423587 223 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 RPS3AP52-201ENST00000435639 297 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 MTND2P22-201ENST00000444325 1033 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 MIR2053-201ENST00000459295 91 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.34□□□□□ -2.36
TREX1Q9NSU2 AC022616.4-201ENST00000522985 181 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.34□□□□□ -2.36
TREX1Q9NSU2 MIR8087-201ENST00000612745 78 ntBASIC0.34□□□□□ -2.36
TREX1Q9NSU2 RNU6-1301P-201ENST00000362724 104 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 Y_RNA.148-201ENST00000363557 117 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 RNU6-961P-201ENST00000363893 105 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 SNORD50B-201ENST00000364995 70 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 MIR1827-201ENST00000408549 66 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 RNA5SP127-201ENST00000411051 133 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 HMGN2P32-201ENST00000444648 269 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 AC092989.1-201ENST00000481235 277 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 Y_RNA.714-201ENST00000517065 90 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 AC055872.1-201ENST00000570978 278 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 PISRT1.1-201ENST00000616930 107 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 AC092794.2-201ENST00000620933 563 ntBASIC0.33□□□□□ -2.36
TREX1Q9NSU2 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
TREX1Q9NSU2 Y_RNA.172-201ENST00000363765 102 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 RNU6-593P-201ENST00000364716 112 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 Y_RNA.361-201ENST00000365515 120 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 RNY1P8-201ENST00000383970 114 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 Y_RNA.453-201ENST00000384223 109 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 RNU6-601P-201ENST00000384540 107 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 SNRPGP10-201ENST00000432323 225 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 MTND1P4-201ENST00000435196 415 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 RNU6-329P-201ENST00000459618 107 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 AC005972.2-201ENST00000604690 348 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 AL355073.2-201ENST00000612106 557 ntBASIC0.32□□□□□ -2.36
TREX1Q9NSU2 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms