Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 Y_RNA.395-201ENST00000383945 109 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.551-201ENST00000384661 102 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 MTND4P19-201ENST00000446659 478 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 CYCTP-201ENST00000504253 315 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-322P-201ENST00000516010 103 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 FAM106DP-201ENST00000586416 501 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 AC090971.5-201ENST00000621102 293 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 AL008636.1-201ENST00000625038 1018 ntBASIC1.01□□□□□ -2.25
EXOSC3Q9NQT5 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
EXOSC3Q9NQT5 RNU4-50P-201ENST00000364361 141 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.286-201ENST00000364813 102 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-867P-201ENST00000364956 107 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.341-201ENST00000365341 102 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.394-201ENST00000383942 103 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.431-201ENST00000384086 102 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.445-201ENST00000384168 102 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.526-201ENST00000384572 110 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-21P-201ENST00000384710 107 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-1105P-201ENST00000384774 107 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 MIR1302-11-201ENST00000408051 138 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 MIR1302-9-201ENST00000408365 138 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 MIR1302-10-201ENST00000408734 138 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-710P-201ENST00000410424 105 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 AL390729.2-201ENST00000416137 156 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 AC048334.1-201ENST00000477975 159 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 AC093852.1-201ENST00000503587 266 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-1046P-201ENST00000516538 107 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1□□□□□ -2.25
EXOSC3Q9NQT5 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1□□□□□ -2.25
EXOSC3Q9NQT5 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1□□□□□ -2.25
EXOSC3Q9NQT5 C8orf59P2-201ENST00000603441 271 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 MIR1302-2-201ENST00000607096 138 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 snoU13.31-201ENST00000607291 104 ntBASIC1□□□□□ -2.25
EXOSC3Q9NQT5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-833P-201ENST00000363486 107 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-450P-201ENST00000364654 107 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 SNORA25.8-201ENST00000364831 128 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.310-201ENST00000365063 113 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.424-201ENST00000384063 103 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 SNORA72-201ENST00000384339 132 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.639-201ENST00000458981 102 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 SNORA31.2-201ENST00000516019 134 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-397P-201ENST00000516226 104 ntBASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.99□□□□□ -2.25
EXOSC3Q9NQT5 MTND4P29-201ENST00000503122 1372 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.148-201ENST00000363557 117 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 U8.5-201ENST00000364528 136 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 SNORD63-201ENST00000384262 68 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 MIR522-201ENST00000385071 87 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 MIR516B2-201ENST00000385190 85 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 PMCHL1-202ENST00000423102 261 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-237P-201ENST00000515985 71 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-475P-201ENST00000516073 104 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 AC022616.4-201ENST00000522985 181 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 AC136932.1-201ENST00000574771 208 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 AL022345.2-201ENST00000606307 135 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 AC027279.3-201ENST00000625055 122 ntBASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.98□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-474P-201ENST00000384243 107 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 SNORA25-201ENST00000384384 134 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 MIR222-201ENST00000384992 110 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 Y_RNA.645-201ENST00000391229 102 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 MIR1298-201ENST00000408783 112 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 MRPL35P3-201ENST00000421557 364 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 AC092473.1-201ENST00000441098 221 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 AC117454.1-201ENST00000491120 168 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 RNU7-40P-201ENST00000516397 64 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 MIR4762-201ENST00000585261 75 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 MIR4295-201ENST00000585286 85 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 POLR3GP1-201ENST00000594073 261 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 AC124312.5-201ENST00000604451 268 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 BX284668.6-201ENST00000606899 438 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 AL160413.1-201ENST00000622780 310 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 AC090574.1-201ENST00000623186 233 ntBASIC0.97□□□□□ -2.25
EXOSC3Q9NQT5 RNU6-1084P-201ENST00000362498 107 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 RNU4-80P-201ENST00000363200 141 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-1048P-201ENST00000364054 107 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.368-201ENST00000365547 113 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.383-201ENST00000383855 97 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-1323P-201ENST00000384025 107 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-910P-201ENST00000390844 107 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 AC024067.1-201ENST00000426199 223 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 SNRPGP10-201ENST00000432323 225 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 POLR2KP2-201ENST00000438155 177 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 HMGN1P7-201ENST00000491722 313 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 SNORD45.4-201ENST00000516629 73 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.713-201ENST00000517013 96 ntBASIC0.96□□□□□ -2.26
EXOSC3Q9NQT5 AC024405.2-202ENST00000532731 184 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms