Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 Y_RNA.101-201ENST00000363154 102 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 SNORD44.1-201ENST00000363202 61 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.157-201ENST00000363638 102 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 SNORD14E-201ENST00000364009 85 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.402-201ENST00000383972 102 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 SNORD38C-201ENST00000384381 69 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 MIR1295A-201ENST00000408463 79 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 RNU2-54P-201ENST00000410299 190 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 SNORD83.1-201ENST00000411362 77 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 AC015818.7-201ENST00000428754 109 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 MTATP6P17-201ENST00000431030 672 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 AC087499.7-201ENST00000441958 109 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 MTND2P22-201ENST00000444325 1033 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 SNRPGP12-201ENST00000449481 213 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 U8.19-201ENST00000459095 133 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 RNU6-1012P-201ENST00000516606 109 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.714-201ENST00000517065 90 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 MIR548AO-201ENST00000579992 96 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 AC005972.2-201ENST00000604690 348 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 AC240442.1-201ENST00000616055 283 ntBASIC0.1□□□□□ -2.39
VCX3AQ9NNX9 AC027514.1-201ENST00000588561 1603 ntBASIC0.09□□□□□ -2.39
VCX3AQ9NNX9 Y_RNA.41-201ENST00000362646 102 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 RNU6-593P-201ENST00000364716 112 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 RNU6-580P-201ENST00000365159 107 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 SNORD114-22-201ENST00000365423 72 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 SNORD116-1-201ENST00000384335 95 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.559-201ENST00000384686 107 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 RNA5SP118-201ENST00000410385 109 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 RNU6-1050P-201ENST00000410388 107 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MTCO2P27-201ENST00000420740 428 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MTND3P21-201ENST00000433774 331 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MTND1P29-201ENST00000448112 647 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 RNU6-977P-201ENST00000516411 103 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.682-201ENST00000516457 100 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 AC060780.3-201ENST00000589464 80 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 RBM11P1-201ENST00000604951 799 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MIR1244-1-201ENST00000612829 85 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MIR6788-201ENST00000618842 66 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MIR6513-201ENST00000621188 64 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MIR1244-3-201ENST00000635744 85 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MIR1244-2-201ENST00000636449 85 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 MIR1244-4-202ENST00000636813 85 ntBASIC0.09□□□□□ -2.4
VCX3AQ9NNX9 SNORA51.10-201ENST00000384418 136 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 RNU6-205P-201ENST00000390858 107 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 MIR548J-201ENST00000408833 112 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 RPL7P42-201ENST00000481005 679 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 RNU4-49P-201ENST00000516080 140 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 MIR2355-201ENST00000517199 87 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 MIR4771-2-201ENST00000577758 74 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 MIR4804-201ENST00000581683 73 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 MIR4771-1-201ENST00000582617 74 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 AC022079.1-201ENST00000621546 602 ntBASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.08□□□□□ -2.4
VCX3AQ9NNX9 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.89-201ENST00000363031 102 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNA5SP62-201ENST00000363457 110 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNY4P14-201ENST00000363656 96 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNU6-324P-201ENST00000363957 106 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.191-201ENST00000363972 113 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNA5SP517-201ENST00000364724 117 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNU6-934P-201ENST00000365154 107 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNU6-926P-201ENST00000384075 107 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 MIR181A1-201ENST00000385026 110 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 MIR518A1-201ENST00000385068 85 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 MIR548F5-201ENST00000408421 86 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNU6-1199P-201ENST00000411249 104 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 SNRPGP14-201ENST00000435400 219 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RPS3AP52-201ENST00000435639 297 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 AC098826.2-201ENST00000452011 651 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 HMGN1P10-201ENST00000474557 553 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNU6-830P-201ENST00000516353 107 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.708-201ENST00000516950 96 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 AC022523.2-201ENST00000561045 150 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 AC087685.1-201ENST00000587507 141 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 Pinc.1-201ENST00000616452 154 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 MTND1P7-201ENST00000632801 297 ntBASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.07□□□□□ -2.4
VCX3AQ9NNX9 RNU6-442P-201ENST00000383968 104 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 RNU6-767P-201ENST00000384132 107 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 RNU6-125P-201ENST00000384505 107 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 Y_RNA.537-201ENST00000384626 109 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 RNU6-679P-201ENST00000391003 106 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 RNU6-192P-201ENST00000391253 100 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 U8.17-201ENST00000391292 132 ntBASIC0.06□□□□□ -2.4
VCX3AQ9NNX9 MIR548K-201ENST00000408406 116 ntBASIC0.06□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms