Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SNORA72.4-201ENST00000384174 132 ntBASIC1.73□□□□□ -2.13
PCDH9Q9HC56 AC104332.1-201ENST00000440471 797 ntBASIC1.73□□□□□ -2.13
PCDH9Q9HC56 Y_RNA.641-201ENST00000459414 105 ntBASIC1.73□□□□□ -2.13
PCDH9Q9HC56 AC024405.2-202ENST00000532731 184 ntBASIC1.73□□□□□ -2.13
PCDH9Q9HC56 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
PCDH9Q9HC56 AC022217.4-201ENST00000604389 163 ntBASIC1.73□□□□□ -2.13
PCDH9Q9HC56 MIR8081-201ENST00000611533 95 ntBASIC1.73□□□□□ -2.13
PCDH9Q9HC56 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.73□□□□□ -2.13
PCDH9Q9HC56 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RNU6-112P-201ENST00000363599 104 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 SNORA4.2-201ENST00000365313 147 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RNU6-338P-201ENST00000383888 105 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RNU6-211P-201ENST00000384047 107 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 Y_RNA.489-201ENST00000384410 101 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 MIR520A-201ENST00000384862 85 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 MIR504-201ENST00000385065 83 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RNU11-5P-201ENST00000391216 129 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RNA5SP100-201ENST00000410903 110 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RNA5SP59-201ENST00000410922 110 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 CYCSP49-201ENST00000420810 319 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 AC245047.3-201ENST00000429428 127 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RPL23AP54-201ENST00000495129 419 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RNU7-115P-201ENST00000516433 55 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 RNA5SP437-201ENST00000517249 129 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 AC011604.1-201ENST00000545978 196 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.72□□□□□ -2.13
PCDH9Q9HC56 BX284668.6-201ENST00000606899 438 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 AL008718.3-201ENST00000610217 321 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 MIR7843-201ENST00000622274 79 ntBASIC1.72□□□□□ -2.13
PCDH9Q9HC56 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.72□□□□□ -2.13
PCDH9Q9HC56 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
PCDH9Q9HC56 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
PCDH9Q9HC56 Y_RNA.76-201ENST00000362931 109 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 RNU6-899P-201ENST00000363947 107 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 Y_RNA.269-201ENST00000364685 89 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 Y_RNA.293-201ENST00000364908 93 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 RNU6-1080P-201ENST00000383982 107 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 Y_RNA.476-201ENST00000384347 108 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 Y_RNA.539-201ENST00000384635 107 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 MIR520G-201ENST00000385064 90 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 AC069257.2-201ENST00000441819 155 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 RNU7-94P-201ENST00000459576 63 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 RNU6-1023P-201ENST00000516137 106 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 RNU6-111P-201ENST00000517179 105 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 MIR548AY-201ENST00000617669 107 ntBASIC1.71□□□□□ -2.14
PCDH9Q9HC56 Y_RNA.122-201ENST00000363331 96 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RNU6-379P-201ENST00000363813 104 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 SNORA63D-201ENST00000364359 132 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RNA5SP363-201ENST00000365072 115 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RNU6-1323P-201ENST00000384025 107 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 Y_RNA.478-201ENST00000384358 107 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RNU6-296P-201ENST00000384608 107 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RNA5SP212-201ENST00000391223 107 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 AL627390.1-201ENST00000396055 340 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 SNORA36B-201ENST00000410438 131 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RPS27P1-201ENST00000450552 247 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RPL36AP21-201ENST00000490372 323 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.7□□□□□ -2.14
PCDH9Q9HC56 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.7□□□□□ -2.14
PCDH9Q9HC56 SNORD116-28-201ENST00000516123 91 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 SNORA25.15-201ENST00000516487 89 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RNU2-56P-201ENST00000516826 190 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 SNORA31.17-201ENST00000516953 127 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RNU6-388P-201ENST00000517012 105 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 RNU6-389P-201ENST00000517048 105 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 MIR5692C2-201ENST00000577959 77 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 AC091178.2-201ENST00000584401 117 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 AL929325.1-201ENST00000603096 117 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 MIR502-201ENST00000606349 86 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 AC013791.1-201ENST00000616619 62 ntBASIC1.7□□□□□ -2.14
PCDH9Q9HC56 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.7□□□□□ -2.14
PCDH9Q9HC56 Y_RNA.20-201ENST00000362479 113 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 RNU6-1205P-201ENST00000363625 106 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 RNU6-440P-201ENST00000390882 105 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 HSPE1P9-201ENST00000440046 311 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.69□□□□□ -2.14
PCDH9Q9HC56 RNU7-116P-201ENST00000516940 62 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 RNU6-341P-201ENST00000516973 96 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 CBX3P4-201ENST00000538909 354 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 AC005357.1-201ENST00000588399 301 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 AP003357.1-201ENST00000604497 148 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 MIR8054-201ENST00000620877 86 ntBASIC1.69□□□□□ -2.14
PCDH9Q9HC56 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
PCDH9Q9HC56 SNORA1B-201ENST00000362535 133 ntBASIC1.68□□□□□ -2.14
PCDH9Q9HC56 RNU4-10P-201ENST00000364383 140 ntBASIC1.68□□□□□ -2.14
PCDH9Q9HC56 Y_RNA.265-201ENST00000364677 108 ntBASIC1.68□□□□□ -2.14
PCDH9Q9HC56 SNORA72-201ENST00000384339 132 ntBASIC1.68□□□□□ -2.14
PCDH9Q9HC56 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.68□□□□□ -2.14
PCDH9Q9HC56 AL049830.1-201ENST00000468034 425 ntBASIC1.68□□□□□ -2.14
PCDH9Q9HC56 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.68□□□□□ -2.14
PCDH9Q9HC56 AC127455.1-201ENST00000565496 145 ntBASIC1.68□□□□□ -2.14
PCDH9Q9HC56 MIR4255-201ENST00000579351 72 ntBASIC1.68□□□□□ -2.14
PCDH9Q9HC56 MIR3683-201ENST00000580847 82 ntBASIC1.68□□□□□ -2.14
PCDH9Q9HC56 MIR4285-201ENST00000581001 85 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 205 ms