Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 AL096861.1-201ENST00000610899 123 ntBASIC0.95□□□□□ -2.26
RPAP3Q9H6T3 AC240442.1-201ENST00000616055 283 ntBASIC0.95□□□□□ -2.26
RPAP3Q9H6T3 AL591926.4-201ENST00000616895 298 ntBASIC0.95□□□□□ -2.26
RPAP3Q9H6T3 AL008636.1-201ENST00000625038 1018 ntBASIC0.95□□□□□ -2.26
RPAP3Q9H6T3 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
RPAP3Q9H6T3 RNU2-54P-201ENST00000410299 190 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 snoU13.25-201ENST00000458945 104 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 Y_RNA.653-201ENST00000459091 95 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 RPS26P48-201ENST00000491713 339 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 CYCTP-201ENST00000504253 315 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 SNORA25.10-201ENST00000515926 124 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 SNORD79.1-201ENST00000516069 84 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 AC005176.2-201ENST00000596933 147 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 AC008163.1-202ENST00000636004 2889 ntBASIC0.94□□□□□ -2.26
RPAP3Q9H6T3 SNORD114-26-201ENST00000363543 72 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 Y_RNA.390-201ENST00000383932 102 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 MIR516B2-201ENST00000385190 85 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 SNORD12-201ENST00000391002 90 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 SNORD78.2-201ENST00000391076 69 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 RNU6-1199P-201ENST00000411249 104 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 AC063976.4-201ENST00000421971 163 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 AC098614.3-201ENST00000438957 440 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 LINC01399-202ENST00000458450 244 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 RNU6-155P-201ENST00000516347 100 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 RNU6-1012P-201ENST00000516606 109 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 MIR4659A-201ENST00000580269 81 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 MIR3192-201ENST00000584920 77 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 MIR4653-201ENST00000585107 83 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 AC027279.3-201ENST00000625055 122 ntBASIC0.93□□□□□ -2.26
RPAP3Q9H6T3 Y_RNA.446-201ENST00000384178 104 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 AL390729.2-201ENST00000416137 156 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 CHEK2P4-201ENST00000450340 246 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 PRDX4P1-201ENST00000507189 574 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 RNU6-699P-201ENST00000517081 110 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 AC004832.4-201ENST00000608952 331 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 AL355073.2-201ENST00000612106 557 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 U2.1-201ENST00000618978 145 ntBASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.92□□□□□ -2.26
RPAP3Q9H6T3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 SNORA80D-201ENST00000384488 135 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 RNU6-1105P-201ENST00000384774 107 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 RNU2-61P-201ENST00000411069 191 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 AC138393.2-201ENST00000414742 246 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 AC093019.1-201ENST00000443135 252 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 RPS20P10-201ENST00000451209 253 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 RNU6-436P-201ENST00000516171 114 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 ACA64.5-201ENST00000516207 127 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 SNORA20.3-201ENST00000516880 132 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 AC138305.3-201ENST00000624988 240 ntBASIC0.91□□□□□ -2.26
RPAP3Q9H6T3 SNORD114-2-201ENST00000363953 78 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.336-201ENST00000365307 109 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 RNU6-1297P-201ENST00000384415 104 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 MIR559-201ENST00000385188 96 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 SNORA75.2-201ENST00000391138 150 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 SNORA75.3-201ENST00000391231 150 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 MIR1298-201ENST00000408783 112 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 SNORD111.1-201ENST00000516421 86 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 RNU6-911P-201ENST00000516523 104 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 PRELID3BP2-201ENST00000605362 201 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 AC025253.1-201ENST00000613623 543 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 AC133104.2-201ENST00000615272 193 ntBASIC0.9□□□□□ -2.27
RPAP3Q9H6T3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 RNU6-490P-201ENST00000362985 107 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 U8.5-201ENST00000364528 136 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.259-201ENST00000364619 101 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 RNU6-969P-201ENST00000383900 105 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 SNORD116-29-201ENST00000384516 83 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 MIR146A-201ENST00000385201 99 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 MIR628-201ENST00000385229 95 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 RNU6-351P-201ENST00000516097 100 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 AC133485.1-201ENST00000567176 124 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 AC138907.6-201ENST00000568401 126 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 MIR4762-201ENST00000585261 75 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 AC099654.14-201ENST00000638599 341 ntBASIC0.89□□□□□ -2.27
RPAP3Q9H6T3 SNORA25.3-201ENST00000363205 127 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.329-201ENST00000365209 107 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.330-201ENST00000365230 109 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 AC099799.1-201ENST00000439809 192 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 RBMX2P4-201ENST00000441256 376 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 PSMC1P5-201ENST00000512850 177 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 RNU6-277P-201ENST00000516272 106 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 AL391903.3-201ENST00000612158 163 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 AC084781.2-201ENST00000615568 161 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 MIR6779-201ENST00000617283 64 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 MIR6835-201ENST00000621552 64 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 U6.92-201ENST00000636464 89 ntBASIC0.88□□□□□ -2.27
RPAP3Q9H6T3 HSBP1P2-201ENST00000299671 229 ntBASIC0.87□□□□□ -2.27
RPAP3Q9H6T3 RNU6-1084P-201ENST00000362498 107 ntBASIC0.87□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.36-201ENST00000362602 112 ntBASIC0.87□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.142-201ENST00000363491 102 ntBASIC0.87□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.146-201ENST00000363549 102 ntBASIC0.87□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.230-201ENST00000364348 109 ntBASIC0.87□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.253-201ENST00000364562 112 ntBASIC0.87□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.387-201ENST00000383918 102 ntBASIC0.87□□□□□ -2.27
RPAP3Q9H6T3 Y_RNA.393-201ENST00000383936 102 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 164 ms