Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC022217.4-201ENST00000604389 163 ntBASIC1.96□□□□□ -2.1
PAAF1Q9BRP4 AL078604.3-201ENST00000615580 211 ntBASIC1.96□□□□□ -2.1
PAAF1Q9BRP4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 SNORA63D-201ENST00000364359 132 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.265-201ENST00000364677 108 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 RNU6-211P-201ENST00000384047 107 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 MIR17-201ENST00000385012 84 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AL627390.1-201ENST00000396055 340 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 SNORA36B-201ENST00000410438 131 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AL606517.2-201ENST00000442855 241 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 SNORD13-201ENST00000459299 104 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.637-201ENST00000459424 114 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.680-201ENST00000516441 93 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 SNORA31.17-201ENST00000516953 127 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AP002004.2-201ENST00000531656 154 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 MIR5692C2-201ENST00000577959 77 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AP003357.1-201ENST00000604497 148 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AL773524.1-201ENST00000614065 229 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 AC013791.1-201ENST00000616619 62 ntBASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.20-201ENST00000362479 113 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 RNU6-1080P-201ENST00000383982 107 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 RNU6-296P-201ENST00000384608 107 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 RNU6-440P-201ENST00000390882 105 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 RN7SKP200-201ENST00000410564 320 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 RNU6-651P-201ENST00000411040 105 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 HSPE1P9-201ENST00000440046 311 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 RNU7-34P-201ENST00000459394 64 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 AL049830.1-201ENST00000468034 425 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 RNU6-250P-201ENST00000516958 103 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 AL008718.3-201ENST00000610217 321 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 MIR8054-201ENST00000620877 86 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 AP000553.5-201ENST00000641933 54 ntBASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
PAAF1Q9BRP4 AC100821.1-201ENST00000523153 2479 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.82-201ENST00000363000 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.92-201ENST00000363043 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.122-201ENST00000363331 96 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.235-201ENST00000364412 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.306-201ENST00000365015 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.312-201ENST00000365089 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.322-201ENST00000365151 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 RNA5SP190-201ENST00000365222 118 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 AC244636.1-201ENST00000421152 228 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.650-201ENST00000459002 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 AC090255.1-201ENST00000495779 349 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 MTND1P19-201ENST00000511780 315 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 RNA5SP458-201ENST00000516188 119 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.777-201ENST00000516982 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 RNA5SP437-201ENST00000517249 129 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 AC127455.1-201ENST00000565496 145 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 MIR4709-201ENST00000577272 72 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.771-201ENST00000598668 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 AC073349.3-201ENST00000617616 186 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.789-201ENST00000622480 102 ntBASIC1.93□□□□□ -2.1
PAAF1Q9BRP4 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 SNORA1B-201ENST00000362535 133 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 SNORA4.2-201ENST00000365313 147 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 RNU6-338P-201ENST00000383888 105 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 RNU6-144P-201ENST00000383951 107 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 MT-TG-201ENST00000387429 68 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 RPS27P1-201ENST00000450552 247 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 snoU13.27-201ENST00000459278 104 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 RPS27P21-201ENST00000486977 252 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 AC079804.2-201ENST00000490376 200 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 AC107393.1-201ENST00000512403 346 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 SNORA25.15-201ENST00000516487 89 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 MIR4643-201ENST00000577473 78 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 MIR4299-201ENST00000577899 72 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 MIR3683-201ENST00000580847 82 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 AC005357.1-201ENST00000588399 301 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 SNORA28-201ENST00000606769 126 ntBASIC1.92□□□□□ -2.1
PAAF1Q9BRP4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 MIR367-201ENST00000362299 68 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 RNU6-457P-201ENST00000363999 107 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 Y_RNA.269-201ENST00000364685 89 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 RNA5SP138-201ENST00000365098 114 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 AC108667.1-201ENST00000428618 249 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 STAG3L5P-204ENST00000443759 179 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 RNU6-437P-201ENST00000459408 95 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 RNU6-111P-201ENST00000517179 105 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 AL358944.1-201ENST00000528537 144 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 AL929325.1-201ENST00000603096 117 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 AP000942.3-201ENST00000603702 160 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 AL442067.1-201ENST00000613261 223 ntBASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.91□□□□□ -2.1
PAAF1Q9BRP4 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 171.1 ms