Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 Y_RNA.485-201ENST00000384395 102 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.93□□□□□ -2.26
SKA3Q8IX90 MTATP6P23-201ENST00000440153 476 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.93□□□□□ -2.26
SKA3Q8IX90 SNORA25.10-201ENST00000515926 124 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 RNU6-1053P-201ENST00000515930 101 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 RNU6-947P-201ENST00000516264 106 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 RNU7-110P-201ENST00000516891 62 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 AC022616.4-201ENST00000522985 181 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 AP001094.1-201ENST00000579805 193 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.93□□□□□ -2.26
SKA3Q8IX90 HSPE1P19-201ENST00000603327 295 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 LARP7P1-201ENST00000605576 316 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 AL133255.1-201ENST00000606374 441 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 SNORD114-21-201ENST00000606412 72 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 AC007485.1-201ENST00000616755 206 ntBASIC0.93□□□□□ -2.26
SKA3Q8IX90 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
SKA3Q8IX90 Y_RNA.197-201ENST00000364004 102 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 U8.5-201ENST00000364528 136 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 Y_RNA.253-201ENST00000364562 112 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 SNORA70.7-201ENST00000384159 133 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 SNORA25-201ENST00000384384 134 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
SKA3Q8IX90 AL590004.1-201ENST00000405321 300 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 RNU6-710P-201ENST00000410424 105 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 AL390729.2-201ENST00000416137 156 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 RPL39P39-201ENST00000455840 151 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 AC048334.1-201ENST00000477975 159 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 AC114811.1-201ENST00000507207 168 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 FAM106DP-201ENST00000586416 501 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 DEFB117-201ENST00000602356 141 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 AC005972.2-201ENST00000604690 348 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 AL080274.1-201ENST00000605565 220 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 AL008636.1-201ENST00000625038 1018 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 AC027279.3-201ENST00000625055 122 ntBASIC0.92□□□□□ -2.26
SKA3Q8IX90 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
SKA3Q8IX90 Y_RNA.439-201ENST00000384119 94 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 Y_RNA.462-201ENST00000384268 102 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 Y_RNA.471-201ENST00000384312 102 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 RNU6-937P-201ENST00000384325 106 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 Y_RNA.526-201ENST00000384572 110 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 RNU6-21P-201ENST00000384710 107 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 MIR452-201ENST00000385020 85 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 RNU4-30P-201ENST00000410245 143 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 AC022028.1-201ENST00000412054 408 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.91□□□□□ -2.26
SKA3Q8IX90 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.91□□□□□ -2.26
SKA3Q8IX90 MTND4LP11-201ENST00000422184 280 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 COX6CP14-201ENST00000469580 174 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 HMGN1P7-201ENST00000491722 313 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 SNORA31.4-201ENST00000516049 129 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 RNA5SP404-201ENST00000517118 132 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
SKA3Q8IX90 AC040926.1-201ENST00000530195 238 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 MIR4762-201ENST00000585261 75 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 BX284668.6-201ENST00000606899 438 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 AC011373.1-201ENST00000607270 237 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 AC027335.2-201ENST00000624030 375 ntBASIC0.91□□□□□ -2.26
SKA3Q8IX90 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.91□□□□□ -2.26
SKA3Q8IX90 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
SKA3Q8IX90 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.9□□□□□ -2.26
SKA3Q8IX90 MIR369-201ENST00000362155 70 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 Y_RNA.112-201ENST00000363250 102 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 RNU4-50P-201ENST00000364361 141 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 Y_RNA.336-201ENST00000365307 109 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 Y_RNA.341-201ENST00000365341 102 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 SNORA72-201ENST00000384339 132 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 Y_RNA.551-201ENST00000384661 102 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 RNU6-910P-201ENST00000390844 107 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 MLLT10P1-201ENST00000418346 262 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 AC245047.7-201ENST00000440265 293 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 U8.20-201ENST00000459445 131 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 RNU6-475P-201ENST00000516073 104 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 MIR3145-201ENST00000580727 82 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.9□□□□□ -2.27
SKA3Q8IX90 PART1_1.1-201ENST00000611761 217 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.9□□□□□ -2.27
SKA3Q8IX90 uc_338.22-201ENST00000622722 187 ntBASIC0.9□□□□□ -2.27
SKA3Q8IX90 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
SKA3Q8IX90 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.89□□□□□ -2.27
SKA3Q8IX90 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.89□□□□□ -2.27
SKA3Q8IX90 SNORD81.1-201ENST00000363064 77 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 RNU6-1187P-201ENST00000364771 110 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 Y_RNA.310-201ENST00000365063 113 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 Y_RNA.419-201ENST00000384041 102 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 MIR522-201ENST00000385071 87 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.89□□□□□ -2.27
SKA3Q8IX90 RNU6-1170P-201ENST00000515974 106 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 Y_RNA.713-201ENST00000517013 96 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 SNORA70.22-201ENST00000517160 124 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 AL096861.1-201ENST00000610899 123 ntBASIC0.89□□□□□ -2.27
SKA3Q8IX90 Y_RNA.143-201ENST00000363520 106 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 RNU4-38P-201ENST00000364472 129 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 Y_RNA.368-201ENST00000365547 113 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 MIR516B2-201ENST00000385190 85 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 RNU6-308P-201ENST00000390957 107 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 RNU6-131P-201ENST00000391144 107 ntBASIC0.88□□□□□ -2.27
SKA3Q8IX90 RNU6-130P-201ENST00000411112 103 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 209.7 ms