Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC-0.78□□□□□ -2.53
USF3Q68DE3 RPL39P5-202ENST00000512505 151 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-0.78□□□□□ -2.53
USF3Q68DE3 PCMTD1P2-201ENST00000565017 355 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 AC099786.3-201ENST00000565735 1410 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 MIR4499-201ENST00000584834 69 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 AC069431.2-201ENST00000604149 1099 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 Y_RNA.804-201ENST00000615262 101 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 AC006927.2-201ENST00000639256 389 ntBASIC-0.78□□□□□ -2.53
USF3Q68DE3 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 SNORA26.5-201ENST00000391215 123 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 MIR548L-201ENST00000408303 86 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 RNA5SP494-201ENST00000410653 129 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 MTND2P18-201ENST00000419962 1030 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 RNU7-181P-201ENST00000517234 74 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 MTND2P32-201ENST00000521584 1038 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 AC138749.4-201ENST00000563970 127 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 AC090616.2-202ENST00000584248 222 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 SRP54-214ENST00000630962 162 ntTSL 5 BASIC-0.79□□□□□ -2.54
USF3Q68DE3 RNU6-873P-201ENST00000363833 107 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.79□□□□□ -2.54
USF3Q68DE3 HLA-S-202ENST00000425174 53 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-0.79□□□□□ -2.54
USF3Q68DE3 AC105417.1-201ENST00000514691 285 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 AC093726.3-201ENST00000637588 150 ntBASIC-0.79□□□□□ -2.54
USF3Q68DE3 RNU6-509P-201ENST00000363519 107 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 Y_RNA.375-201ENST00000365625 101 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 SNORD73A-201ENST00000386062 65 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 AP002802.2-201ENST00000605877 235 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 U7.6-201ENST00000610841 64 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 5S_rRNA.15-201ENST00000611169 127 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 AC105081.1-201ENST00000617727 106 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 Y_RNA.189-201ENST00000363959 112 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 Y_RNA.270-201ENST00000364693 104 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 SNORD115-44-201ENST00000365391 82 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 MIR876-201ENST00000401147 81 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 RNU7-138P-201ENST00000459479 64 ntBASIC-0.8□□□□□ -2.54
USF3Q68DE3 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-0.8□□□□□ -2.54
USF3Q68DE3 Y_RNA.179-201ENST00000363844 90 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-266P-201ENST00000364225 107 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 Y_RNA.253-201ENST00000364562 112 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-1029P-201ENST00000384109 107 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 SNORA20B-201ENST00000384220 132 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 SNORD116-12-201ENST00000384468 92 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-1104P-201ENST00000384723 104 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-131P-201ENST00000391144 107 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 MTCO2P11-201ENST00000431069 680 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 AL359672.1-201ENST00000442302 409 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 AL137792.2-201ENST00000443484 235 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 SNORD123-201ENST00000459473 70 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 MTCO2P29-201ENST00000465212 189 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 HSPE1P23-201ENST00000509838 286 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 AC010598.1-201ENST00000510378 103 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 Y_RNA.714-201ENST00000517065 90 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-334P-201ENST00000517072 102 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC-0.81□□□□□ -2.54
USF3Q68DE3 MIR101-2-201ENST00000362195 79 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-179P-201ENST00000363350 107 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-442P-201ENST00000383968 104 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 Y_RNA.536-201ENST00000384621 113 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 SNORD38B-201ENST00000384690 67 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 SNORD93-201ENST00000408813 74 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-1165P-201ENST00000410119 107 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-855P-201ENST00000410395 104 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-847P-201ENST00000411115 108 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 AL008987.1-201ENST00000415528 237 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 SNRPGP14-201ENST00000435400 219 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 AC010655.3-201ENST00000478818 450 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 AC021146.6-201ENST00000514659 117 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-612P-201ENST00000516909 102 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 RNU6-706P-201ENST00000517229 104 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC-0.81□□□□□ -2.54
USF3Q68DE3 UBL5P4-201ENST00000562584 236 ntBASIC-0.81□□□□□ -2.54
USF3Q68DE3 SNORA69-201ENST00000383895 132 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 RNU6-784P-201ENST00000384330 106 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 Y_RNA.559-201ENST00000384686 107 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 MIR522-201ENST00000385071 87 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 MIRLET7F2-201ENST00000385277 83 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 SNORA75.4-201ENST00000391278 119 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-0.82□□□□□ -2.54
USF3Q68DE3 SNORA13-201ENST00000458790 133 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 RNA5SP20-201ENST00000515976 84 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 SNORD45.4-201ENST00000516629 73 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 RNA5SP66-201ENST00000517178 101 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 BNIP3P40-201ENST00000596017 556 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 AL121757.2-201ENST00000611223 313 ntBASIC-0.82□□□□□ -2.54
USF3Q68DE3 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC-0.83□□□□□ -2.54
USF3Q68DE3 Y_RNA.184-201ENST00000363884 108 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 RNU4-16P-201ENST00000364737 141 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 RNU6-715P-201ENST00000365204 103 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC-0.83□□□□□ -2.54
USF3Q68DE3 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 RNA5SP461-201ENST00000516451 104 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 MIR3684-201ENST00000579779 74 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 AC138207.3-201ENST00000585289 166 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 MTND1P7-201ENST00000632801 297 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 SNORD114-25-201ENST00000363742 72 ntBASIC-0.83□□□□□ -2.54
USF3Q68DE3 AL512286.1-201ENST00000439244 400 ntBASIC-0.83□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms