Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SUMO2P12-201ENST00000405924 140 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 COX6CP10-201ENST00000416832 224 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 AL162725.1-201ENST00000435405 301 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.3□□□□□ -2.04
VPS53Q5VIR6 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.3□□□□□ -2.04
VPS53Q5VIR6 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
VPS53Q5VIR6 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
VPS53Q5VIR6 Y_RNA.121-201ENST00000363309 113 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 Y_RNA.150-201ENST00000363562 102 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 SNORA8.3-201ENST00000384679 139 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 MIR626-201ENST00000385032 94 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 PCNPP3-201ENST00000393579 471 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.29□□□□□ -2.04
VPS53Q5VIR6 RNU7-172P-201ENST00000517125 64 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 AC015720.1-201ENST00000565251 277 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 AC127455.1-201ENST00000565496 145 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 Y_RNA.802-201ENST00000614892 130 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 MIR338-201ENST00000636369 67 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 AC068700.1-201ENST00000565862 3754 ntBASIC2.29□□□□□ -2.04
VPS53Q5VIR6 Y_RNA.7-201ENST00000362352 102 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 Y_RNA.293-201ENST00000364908 93 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 RNU6-1062P-201ENST00000383908 107 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 MIR597-201ENST00000384968 97 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 RNU11-5P-201ENST00000391216 129 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 RNA5SP511-201ENST00000410487 115 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 AL445685.2-201ENST00000422551 342 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 ATP5J2P3-201ENST00000451550 258 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 AC117454.1-201ENST00000491120 168 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 RPS29P11-201ENST00000496507 171 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.28□□□□□ -2.04
VPS53Q5VIR6 RNU6-63P-201ENST00000516690 95 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 U6.106-201ENST00000636360 105 ntBASIC2.28□□□□□ -2.04
VPS53Q5VIR6 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.28□□□□□ -2.04
VPS53Q5VIR6 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RNA5SP493-201ENST00000364115 91 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 Y_RNA.240-201ENST00000364469 95 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RNU6-417P-201ENST00000384712 107 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 Y_RNA.571-201ENST00000384753 98 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 MIR515-2-201ENST00000384883 83 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 MIR515-1-201ENST00000384884 83 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RNA5SP212-201ENST00000391223 107 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RNU6-381P-201ENST00000391259 108 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 AL117342.1-201ENST00000404861 406 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 SNORA36B-201ENST00000410438 131 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RPL23AP6-201ENST00000446637 472 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RN7SKP164-201ENST00000516138 266 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RNU6-1041P-201ENST00000516254 102 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RNU7-99P-201ENST00000516271 62 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 RNU6-861P-201ENST00000516745 106 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 AC022559.1-201ENST00000520905 205 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 MIR3169-201ENST00000578032 83 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 POLR3GP1-201ENST00000594073 261 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.27□□□□□ -2.05
VPS53Q5VIR6 AL627230.6-201ENST00000611129 280 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 AL773524.1-201ENST00000614065 229 ntBASIC2.27□□□□□ -2.05
VPS53Q5VIR6 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.27□□□□□ -2.05
VPS53Q5VIR6 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
VPS53Q5VIR6 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VPS53Q5VIR6 RNU6-674P-201ENST00000363831 107 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 RNU4-13P-201ENST00000364019 141 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.26□□□□□ -2.05
VPS53Q5VIR6 Y_RNA.464-201ENST00000384282 110 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 SNORA72-201ENST00000384339 132 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 U8.13-201ENST00000390842 128 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 AC019129.1-201ENST00000403786 261 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 RNA5SP489-201ENST00000410986 109 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 EBAG9P1-201ENST00000418955 543 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS53Q5VIR6 MIR4724-201ENST00000579485 89 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 AL359075.3-201ENST00000613288 217 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 MIR6715A-201ENST00000615929 79 ntBASIC2.26□□□□□ -2.05
VPS53Q5VIR6 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS53Q5VIR6 Y_RNA.238-201ENST00000364441 102 ntBASIC2.25□□□□□ -2.05
VPS53Q5VIR6 RNU6-376P-201ENST00000384731 106 ntBASIC2.25□□□□□ -2.05
VPS53Q5VIR6 CST2P1-201ENST00000425770 87 ntBASIC2.25□□□□□ -2.05
VPS53Q5VIR6 Y_RNA.662-201ENST00000516028 97 ntBASIC2.25□□□□□ -2.05
VPS53Q5VIR6 RNU7-128P-201ENST00000517247 62 ntBASIC2.25□□□□□ -2.05
VPS53Q5VIR6 MIR4299-201ENST00000577899 72 ntBASIC2.25□□□□□ -2.05
VPS53Q5VIR6 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.25□□□□□ -2.05
VPS53Q5VIR6 MIR367-201ENST00000362299 68 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 RNU6-103P-201ENST00000363686 107 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 SNORA8-201ENST00000384574 139 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 MIR520G-201ENST00000385064 90 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 MIR9-3-201ENST00000385084 90 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 AC244636.1-201ENST00000421152 228 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS53Q5VIR6 RPS4XP11-201ENST00000446897 772 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 RNU6-437P-201ENST00000459408 95 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 RNU6-1219P-201ENST00000516143 112 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 AC024995.1-201ENST00000523014 93 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.24□□□□□ -2.05
VPS53Q5VIR6 AC005786.1-201ENST00000588553 154 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 uc_338.20-201ENST00000621563 178 ntBASIC2.24□□□□□ -2.05
VPS53Q5VIR6 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.24□□□□□ -2.05
VPS53Q5VIR6 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
VPS53Q5VIR6 RNU4-10P-201ENST00000364383 140 ntBASIC2.23□□□□□ -2.05
VPS53Q5VIR6 MIR616-201ENST00000385293 97 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms