Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC011476.5-201ENST00000615594 130 ntBASIC0.83□□□□□ -2.28
CCDC40Q4G0X9 AC117470.1-201ENST00000381974 330 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.605-201ENST00000410577 105 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 MLLT10P1-201ENST00000418346 262 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 AL606490.4-201ENST00000423117 127 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 RPS29P1-201ENST00000465274 159 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 PRDX4P1-201ENST00000507189 574 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 RNU6-155P-201ENST00000516347 100 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 AP003716.2-201ENST00000528260 108 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 MIR4452-201ENST00000583004 71 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 AC022306.2-201ENST00000617563 647 ntBASIC0.82□□□□□ -2.28
CCDC40Q4G0X9 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 MIR373-201ENST00000362273 69 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.248-201ENST00000364501 109 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.330-201ENST00000365230 109 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 MIR520C-201ENST00000385005 87 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 MIR136-201ENST00000385207 82 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.599-201ENST00000410489 109 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 MTCO3P10-201ENST00000455912 772 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 RNU7-41P-201ENST00000515917 61 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 SNORD45.4-201ENST00000516629 73 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 MIR4659A-201ENST00000580269 81 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 AC108706.1-201ENST00000611053 297 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 U6atac.1-201ENST00000616025 117 ntBASIC0.81□□□□□ -2.28
CCDC40Q4G0X9 HSBP1P2-201ENST00000299671 229 ntBASIC0.8□□□□□ -2.28
CCDC40Q4G0X9 MIR103A2-201ENST00000362154 78 ntBASIC0.8□□□□□ -2.28
CCDC40Q4G0X9 SNORA25.3-201ENST00000363205 127 ntBASIC0.8□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.226-201ENST00000364337 114 ntBASIC0.8□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.474-201ENST00000384341 102 ntBASIC0.8□□□□□ -2.28
CCDC40Q4G0X9 MIR605-201ENST00000385078 83 ntBASIC0.8□□□□□ -2.28
CCDC40Q4G0X9 AC005972.2-201ENST00000604690 348 ntBASIC0.8□□□□□ -2.28
CCDC40Q4G0X9 U2.1-201ENST00000618978 145 ntBASIC0.8□□□□□ -2.28
CCDC40Q4G0X9 RNU6-1084P-201ENST00000362498 107 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.146-201ENST00000363549 102 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 SNORD14.1-201ENST00000365609 90 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 MIR1185-1-201ENST00000408598 86 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 RNA5SP247-201ENST00000411181 105 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 AL390729.2-201ENST00000416137 156 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 MTND1P2-201ENST00000430604 821 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 FABP5P4-201ENST00000437203 171 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 SNORA18.7-201ENST00000516910 131 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 AC092794.1-201ENST00000612734 582 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 SEPT14P17-201ENST00000617978 177 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 AC138305.3-201ENST00000624988 240 ntBASIC0.79□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.314-201ENST00000365114 102 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 RNU6-708P-201ENST00000384217 107 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 SNORA72-201ENST00000384339 132 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 MIR1287-201ENST00000408492 90 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 AC004941.2-201ENST00000427009 228 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.653-201ENST00000459091 95 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 RNU6-559P-201ENST00000516151 98 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 MIR4764-201ENST00000580680 88 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 AC131055.1-201ENST00000584626 316 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 AC113139.1-201ENST00000605049 239 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 AC022441.3-201ENST00000605737 136 ntBASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.78□□□□□ -2.28
CCDC40Q4G0X9 Y_RNA.230-201ENST00000364348 109 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 SNORD50B-201ENST00000364995 70 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 snoU2-30.1-201ENST00000365012 70 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 RNU6-1297P-201ENST00000384415 104 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 MIR15B-201ENST00000385045 98 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 MIR628-201ENST00000385229 95 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 AL035398.1-201ENST00000430869 322 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 MTND5P15-201ENST00000434246 349 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 AC117454.1-201ENST00000491120 168 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 RNU6-911P-201ENST00000516523 104 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 AC023827.1-201ENST00000569247 97 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 U6.92-201ENST00000636464 89 ntBASIC0.77□□□□□ -2.29
CCDC40Q4G0X9 Y_RNA.329-201ENST00000365209 107 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 MIR559-201ENST00000385188 96 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 RNU6-131P-201ENST00000391144 107 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 MCFD2P1-201ENST00000417812 300 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 AC096644.2-201ENST00000429278 159 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 U8.19-201ENST00000459095 133 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 RN7SKP164-201ENST00000516138 266 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 RNU7-43P-201ENST00000516554 64 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 AC109810.1-201ENST00000534066 224 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 RBM11P1-201ENST00000604951 799 ntBASIC0.76□□□□□ -2.29
CCDC40Q4G0X9 Y_RNA.27-201ENST00000362540 103 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 RNU6-1335P-201ENST00000365426 107 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 Y_RNA.619-201ENST00000410951 90 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 SNRPGP10-201ENST00000432323 225 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 AC099799.1-201ENST00000439809 192 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 HMGN2P32-201ENST00000444648 269 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 SNORD123-201ENST00000459473 70 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 RN7SKP295-201ENST00000517264 153 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 DEFB108E-201ENST00000524692 240 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 AL353765.1-201ENST00000605514 183 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 AC133104.2-201ENST00000615272 193 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 MIR6835-201ENST00000621552 64 ntBASIC0.75□□□□□ -2.29
CCDC40Q4G0X9 RNU6-490P-201ENST00000362985 107 ntBASIC0.74□□□□□ -2.29
CCDC40Q4G0X9 RNA5SP48-201ENST00000363969 126 ntBASIC0.74□□□□□ -2.29
CCDC40Q4G0X9 RNU6-855P-201ENST00000410395 104 ntBASIC0.74□□□□□ -2.29
CCDC40Q4G0X9 RPS26P5-201ENST00000418544 335 ntBASIC0.74□□□□□ -2.29
CCDC40Q4G0X9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 128 ms