Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 SUMO1P2-201ENST00000452524 304 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 AC116562.3-201ENST00000506136 177 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 RNU6-341P-201ENST00000516973 96 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 RNU1-117P-201ENST00000517041 158 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 MIR4762-201ENST00000585261 75 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 AC245008.1-201ENST00000608123 476 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 AL512427.1-201ENST00000618593 349 ntBASIC-0.46□□□□□ -2.48
CHD9Q3L8U1 SNORD56.2-201ENST00000363242 71 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.145-201ENST00000363527 102 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 RNU6-517P-201ENST00000384362 110 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 MIR1-2-201ENST00000384961 85 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 ZNF114P1-201ENST00000453500 292 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 RNU6-469P-201ENST00000516253 101 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 MTND4LP18-201ENST00000526864 291 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 HIF1AP1-201ENST00000553642 175 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 AC090617.3-201ENST00000573670 475 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 AL355375.2-201ENST00000574825 175 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 MIR5591-201ENST00000578248 65 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 AF250324.2-201ENST00000608299 610 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 SNORD115-7-201ENST00000365306 82 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 Y_RNA.537-201ENST00000384626 109 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 SNORD73A-201ENST00000386062 65 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 MTCO2P21-201ENST00000419780 677 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 MTND2P18-201ENST00000419962 1030 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 MTCO2P11-201ENST00000431069 680 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 UQCRBP2-201ENST00000447827 297 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 AC087499.4-201ENST00000448505 178 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 AC010587.1-201ENST00000505809 469 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 RNU6-706P-201ENST00000517229 104 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 CR383656.4-201ENST00000546909 122 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 AL121895.2-201ENST00000619558 447 ntBASIC-0.47□□□□□ -2.48
CHD9Q3L8U1 RNY1P12-201ENST00000364251 105 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 MIR501-201ENST00000390204 84 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 MIR320B2-201ENST00000408479 138 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 RNA5SP163-201ENST00000410304 99 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 RPL23AP75-201ENST00000491601 451 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 RNA5SP20-201ENST00000515976 84 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 AC011458.1-201ENST00000604034 617 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 AC020891.4-201ENST00000605745 93 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 AC022306.2-201ENST00000617563 647 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 AC008873.1-201ENST00000625051 138 ntBASIC-0.47□□□□□ -2.49
CHD9Q3L8U1 SNORD114-14-201ENST00000362723 75 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 snoU2-30.1-201ENST00000365012 70 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU6-811P-201ENST00000384069 107 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.608-201ENST00000410647 95 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 FCF1P9-201ENST00000412546 282 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 MTND2P3-201ENST00000452458 470 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU6-63P-201ENST00000516690 95 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 AC022878.1-201ENST00000530684 149 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 MIR4499-201ENST00000584834 69 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 AL596211.1-201ENST00000569873 2277 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU6-1266P-201ENST00000362794 105 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU6-179P-201ENST00000363350 107 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.128-201ENST00000363391 112 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU6-280P-201ENST00000364145 104 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 SNORA20.2-201ENST00000383922 131 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU6-533P-201ENST00000384144 107 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.577-201ENST00000384794 101 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU4-30P-201ENST00000410245 143 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.630-201ENST00000411370 108 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 AC243428.1-201ENST00000421099 264 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 snoU13.6-201ENST00000458785 104 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 AC064836.2-201ENST00000609491 462 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 Z97988.1-201ENST00000637697 135 ntBASIC-0.48□□□□□ -2.49
CHD9Q3L8U1 RNU6-226P-201ENST00000363778 107 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.399-201ENST00000383955 105 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 SUMO1P3-201ENST00000439961 304 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 RNU7-73P-201ENST00000458743 63 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 MTND1P35-201ENST00000526739 508 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 AC121247.2-201ENST00000604776 136 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 MRPS10P1-201ENST00000448483 130 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 AC080013.3-201ENST00000606839 578 ntBASIC-0.49□□□□□ -2.49
CHD9Q3L8U1 MIR335-201ENST00000362173 94 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 RNU6-1094P-201ENST00000362416 104 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.253-201ENST00000364562 112 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 RNU6-1317P-201ENST00000364582 104 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 Y_RNA.578-201ENST00000390903 88 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 SNORD70.1-201ENST00000391007 85 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 USP9YP16-201ENST00000430287 407 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 USP9YP23-201ENST00000455085 407 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 RPL39P34-201ENST00000477141 156 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 MTCO3P23-201ENST00000561363 289 ntBASIC-0.5□□□□□ -2.49
CHD9Q3L8U1 MIR3684-201ENST00000579779 74 ntBASIC-0.5□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 184.8 ms