Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SNORD45.4-201ENST00000516629 73 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.71□□□□□ -2.3
PKNOX1P55347 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.71□□□□□ -2.3
PKNOX1P55347 MIR4498-201ENST00000577599 66 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 AC005972.2-201ENST00000604690 348 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 AC022441.3-201ENST00000605737 136 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 MTND4LP32-201ENST00000636111 270 ntBASIC0.71□□□□□ -2.3
PKNOX1P55347 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.71□□□□□ -2.3
PKNOX1P55347 SNORA72-201ENST00000384339 132 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 SNORD116-29-201ENST00000384516 83 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 MIR608-201ENST00000384820 100 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 MIR136-201ENST00000385207 82 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 MLLT10P1-201ENST00000418346 262 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 AC004941.2-201ENST00000427009 228 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 MTND5P15-201ENST00000434246 349 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.7□□□□□ -2.3
PKNOX1P55347 TRMT112P2-201ENST00000512910 132 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 RNU6-277P-201ENST00000516272 106 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 SNORA20.3-201ENST00000516880 132 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.7□□□□□ -2.3
PKNOX1P55347 RBM11P1-201ENST00000604951 799 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 AL355073.2-201ENST00000612106 557 ntBASIC0.7□□□□□ -2.3
PKNOX1P55347 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.7□□□□□ -2.3
PKNOX1P55347 HSBP1P2-201ENST00000299671 229 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 MIR103A2-201ENST00000362154 78 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 MIR373-201ENST00000362273 69 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 Y_RNA.27-201ENST00000362540 103 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 SNORD114-27-201ENST00000363766 70 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 Y_RNA.230-201ENST00000364348 109 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 SNORD50B-201ENST00000364995 70 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 Y_RNA.329-201ENST00000365209 107 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 MIR520C-201ENST00000385005 87 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 MIR628-201ENST00000385229 95 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 AL390729.2-201ENST00000416137 156 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 MCFD2P1-201ENST00000417812 300 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 PSMC1P5-201ENST00000512850 177 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 RN7SKP164-201ENST00000516138 266 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 SNORA18.7-201ENST00000516910 131 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 RNU6-699P-201ENST00000517081 110 ntBASIC0.69□□□□□ -2.3
PKNOX1P55347 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.69□□□□□ -2.3
PKNOX1P55347 RNU6-490P-201ENST00000362985 107 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 Y_RNA.330-201ENST00000365230 109 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 Y_RNA.338-201ENST00000365320 114 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 RNU6-1335P-201ENST00000365426 107 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 SNORD14.1-201ENST00000365609 90 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 RNU6-1297P-201ENST00000384415 104 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 Y_RNA.570-201ENST00000384750 101 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 AC138393.2-201ENST00000414742 246 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.68□□□□□ -2.3
PKNOX1P55347 AC098614.3-201ENST00000438957 440 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 AC099799.1-201ENST00000439809 192 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 RN7SKP295-201ENST00000517264 153 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 AC136628.3-201ENST00000521868 290 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 MIR4764-201ENST00000580680 88 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 MIR4423-201ENST00000580922 80 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 AC131055.1-201ENST00000584626 316 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 SEPT14P17-201ENST00000617978 177 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 MIR6767-201ENST00000637302 66 ntBASIC0.68□□□□□ -2.3
PKNOX1P55347 RNU6-1084P-201ENST00000362498 107 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 snoU2-30.1-201ENST00000365012 70 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 RNU6-1175P-201ENST00000365200 107 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 Y_RNA.390-201ENST00000383932 102 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 RNU6-1040P-201ENST00000383974 107 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 RNY4P36-201ENST00000391116 96 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 RNU6-321P-201ENST00000410912 106 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 AL035398.1-201ENST00000430869 322 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 SNRPGP10-201ENST00000432323 225 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 RBMX2P4-201ENST00000441256 376 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 AC117454.1-201ENST00000491120 168 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 AC023827.1-201ENST00000569247 97 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 AC006600.1-201ENST00000572529 153 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 AC133104.2-201ENST00000615272 193 ntBASIC0.67□□□□□ -2.3
PKNOX1P55347 Y_RNA.259-201ENST00000364619 101 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 Y_RNA.310-201ENST00000365063 113 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 MIR15B-201ENST00000385045 98 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 RNU6-131P-201ENST00000391144 107 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 RNU6-855P-201ENST00000410395 104 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 SNORD123-201ENST00000459473 70 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 RNU7-43P-201ENST00000516554 64 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 AC109810.1-201ENST00000534066 224 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 VN1R91P-201ENST00000594377 169 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 MIR4272-201ENST00000635924 64 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 AC099654.14-201ENST00000638599 341 ntBASIC0.66□□□□□ -2.3
PKNOX1P55347 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.65□□□□□ -2.3
PKNOX1P55347 SNORD81.1-201ENST00000363064 77 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 Y_RNA.387-201ENST00000383918 102 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 RNU6-1323P-201ENST00000384025 107 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 Y_RNA.463-201ENST00000384271 102 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 AL590004.1-201ENST00000405321 300 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 FABP5P4-201ENST00000437203 171 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 HMGN2P32-201ENST00000444648 269 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 AC005042.3-201ENST00000453230 174 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 AC091951.2-201ENST00000500762 203 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 Y_RNA.718-201ENST00000517110 102 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 AL353765.1-201ENST00000605514 183 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 AC025253.1-201ENST00000613623 543 ntBASIC0.65□□□□□ -2.31
PKNOX1P55347 Y_RNA.142-201ENST00000363491 102 ntBASIC0.64□□□□□ -2.31
PKNOX1P55347 RNA5SP48-201ENST00000363969 126 ntBASIC0.64□□□□□ -2.31
PKNOX1P55347 Y_RNA.368-201ENST00000365547 113 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms