Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL078604.3-201ENST00000615580 211 ntBASIC1.64□□□□□ -2.15
HOXA1P49639 AL590808.1-201ENST00000618696 141 ntBASIC1.64□□□□□ -2.15
HOXA1P49639 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
HOXA1P49639 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
HOXA1P49639 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.63□□□□□ -2.15
HOXA1P49639 RNU6-1205P-201ENST00000363625 106 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 Y_RNA.257-201ENST00000364596 102 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 RNU6-439P-201ENST00000384188 106 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 MIR515-2-201ENST00000384883 83 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 MIR515-1-201ENST00000384884 83 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 SNORA12.1-201ENST00000390873 148 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 MIR1298-201ENST00000408783 112 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 RNU2-7P-201ENST00000410794 178 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 AL139156.1-201ENST00000412785 841 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 MTND2P29-201ENST00000438595 412 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.63□□□□□ -2.15
HOXA1P49639 AC009779.6-201ENST00000603972 165 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 AC073349.3-201ENST00000617616 186 ntBASIC1.63□□□□□ -2.15
HOXA1P49639 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.63□□□□□ -2.15
HOXA1P49639 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.63□□□□□ -2.15
HOXA1P49639 AC100821.1-201ENST00000523153 2479 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
HOXA1P49639 ICE2P2-201ENST00000483823 2787 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.62□□□□□ -2.15
HOXA1P49639 RNU4-82P-201ENST00000362443 140 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 Y_RNA.24-201ENST00000362508 103 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 Y_RNA.199-201ENST00000364014 102 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 SNORA63D-201ENST00000364359 132 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 SNORA72-201ENST00000384339 132 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 Y_RNA.552-201ENST00000384665 112 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 RNU6-997P-201ENST00000384725 107 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 AL158823.1-201ENST00000418441 478 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 RPL36AP21-201ENST00000490372 323 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 RNU6-138P-201ENST00000515952 107 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 RNU4-71P-201ENST00000516258 113 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 RNU6-341P-201ENST00000516973 96 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 AC091544.4-201ENST00000555268 342 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 MIR1273D-201ENST00000577266 86 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 AC024614.2-201ENST00000577584 372 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 MIR4299-201ENST00000577899 72 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.62□□□□□ -2.15
HOXA1P49639 AC141273.2-201ENST00000618989 130 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 MIR8054-201ENST00000620877 86 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 MIR6852-201ENST00000621699 66 ntBASIC1.62□□□□□ -2.15
HOXA1P49639 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
HOXA1P49639 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
HOXA1P49639 RNU6-653P-201ENST00000363074 106 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 RNY1-201ENST00000364228 113 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 Y_RNA.304-201ENST00000365011 112 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 RNU6-47P-201ENST00000383866 107 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 RNU6-969P-201ENST00000383900 105 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 MIR520A-201ENST00000384862 85 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 MIR520G-201ENST00000385064 90 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 RNU6-440P-201ENST00000390882 105 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 STAG3L5P-204ENST00000443759 179 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 RNU6-437P-201ENST00000459408 95 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 RNU2-56P-201ENST00000516826 190 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 AC022559.1-201ENST00000520905 205 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 AC100767.1-201ENST00000528178 123 ntBASIC1.61□□□□□ -2.15
HOXA1P49639 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
HOXA1P49639 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
HOXA1P49639 Y_RNA.200-201ENST00000364018 102 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 snoU2_19.4-201ENST00000364329 80 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 RNU4-41P-201ENST00000364426 143 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 Y_RNA.297-201ENST00000364950 91 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 Y_RNA.515-201ENST00000384535 112 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 MLLT10P1-201ENST00000418346 262 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 MTND5P15-201ENST00000434246 349 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 RNU7-34P-201ENST00000459394 64 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 UBE2DNL-203ENST00000474922 222 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.6□□□□□ -2.15
HOXA1P49639 RNU7-116P-201ENST00000516940 62 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 MIR4308-201ENST00000580634 81 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 Y_RNA.783-201ENST00000613546 102 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 AL591926.4-201ENST00000616895 298 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 U1.36-201ENST00000620684 176 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 AC064859.1-201ENST00000624741 174 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 MIR219B-201ENST00000637023 88 ntBASIC1.6□□□□□ -2.15
HOXA1P49639 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.6□□□□□ -2.15
HOXA1P49639 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXA1P49639 MIR411-201ENST00000362239 96 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 Y_RNA.83-201ENST00000363005 113 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 Y_RNA.203-201ENST00000364106 102 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 Y_RNA.253-201ENST00000364562 112 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 MT-TT-201ENST00000387460 66 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 AC108059.2-201ENST00000434626 151 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 Z98949.2-201ENST00000440996 144 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.59□□□□□ -2.15
HOXA1P49639 AC245047.8-201ENST00000456455 284 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 AL049830.1-201ENST00000468034 425 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.59□□□□□ -2.15
HOXA1P49639 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.59□□□□□ -2.15
HOXA1P49639 SCARNA8-201ENST00000515924 131 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 RNU6-453P-201ENST00000516819 85 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 RNU6-1116P-201ENST00000517269 99 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 RPL23AP91-201ENST00000569211 455 ntBASIC1.59□□□□□ -2.15
HOXA1P49639 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.16
HOXA1P49639 ZNF355P-201ENST00000427301 3216 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 MIR367-201ENST00000362299 68 ntBASIC1.58□□□□□ -2.16
HOXA1P49639 SNORD68-201ENST00000363214 84 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms